Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B11
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.40 
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 476 DVTNEAITNRDATNGYDTNGYDTNGYVTN 562
           ++TN +IT     + Y+ N  D+N  +TN
Sbjct: 9   NITNSSITETYFVSAYNLNQEDSNWIITN 37


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 64  TFYQQFCIFYKSF*KFEQC 120
           T++QQ+C+ +K   K  +C
Sbjct: 16  TYFQQYCLHHKILIKKNKC 34


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 479 VTNEAITNRDATNGYDTNGYDTNGY 553
           ++N  I N +    Y+ N Y+ N Y
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 479 VTNEAITNRDATNGYDTNGYDTNGY 553
           ++N  I N +    Y+ N Y+ N Y
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNNNY 108


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 123 ITVHNLPHDTQYSDIKSLIESKCGLRDI 206
           +TVH+ P       +K   + KC +  I
Sbjct: 381 LTVHSFPSTLNIPSVKIDEDQKCSIESI 408


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 135 NLPHDTQYSDIKSLIES--KCGLRDIILDKLLPEGATKKVTV 254
           N+  +    ++   IES    GLR+I+LD +   G  K   V
Sbjct: 181 NIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPV 222


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 282 MLVRNLNGMYMQNLQLFVE 338
           ++VR  NG+ +++  LFVE
Sbjct: 388 VMVRTCNGLELRDPSLFVE 406


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +2

Query: 425 IQWDNWDVWKP*WSTNDDVTN 487
           I+W NWD+    W    ++ N
Sbjct: 263 IKWKNWDLKYNTWEPISNLIN 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,810
Number of Sequences: 438
Number of extensions: 2578
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)