Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B10
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    50   2e-07
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         45   6e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    34   0.009
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.34 
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    27   1.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   2.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.1  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    25   4.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   5.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   5.5  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   5.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   7.3  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   7.3  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   7.3  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   7.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   9.6  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 28/100 (28%), Positives = 54/100 (54%)
 Frame = +3

Query: 54  IFGKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQLSKAGDEDEQLLGHL 233
           IF KI++ +IP   + E    +AF D+ P +  H LVIP++  +++ +  DE       +
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKMHELSDES---CADI 60

Query: 234 LIVARKVATQEGLDKSGFRLVINDGKNGAQSVYHLHVHVL 353
           L + +KV   + +    + ++ N+G+   Q V H+H H++
Sbjct: 61  LPLVKKVT--KAIGPENYNVLQNNGRIAHQFVDHVHFHII 98


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 44.8 bits (101), Expect = 6e-06
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +3

Query: 81  IPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQLSKAGDEDEQLLGHLLIVARKV-- 254
           + ++  Y      AF ++ P  P H+LVIP++ + +L    D     L  L    RKV  
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLK---DLTPSELTDLFTSVRKVQQ 68

Query: 255 ATQEGLDKSGFRLVINDGKNGAQSVYHLHVHVLGGRQLEW 374
             ++    S   + I DG +  Q+V H+HVH++  ++ ++
Sbjct: 69  VIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKADF 108


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 34.3 bits (75), Expect = 0.009
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -2

Query: 396 PAIFNREATPIDVHPGRERASDIRSVPHSCHHLLLN------GNQTCPAPPGLPPYERQ 238
           P  + +E   +D  P RER    RS  H+ HH + N      GN+  P+   +PP E Q
Sbjct: 239 PGNYRKERYNVDSRPRRERHFHGRSFAHAEHHSVPNMRNDTPGNEALPSHSSVPPNEDQ 297


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 21/73 (28%), Positives = 39/73 (53%)
 Frame = +3

Query: 96  VYEDDQCVAFHDVNPQAPTHILVIPRKPISQLSKAGDEDEQLLGHLLIVARKVATQEGLD 275
           +Y DD  V   D+ P++  H+L++ R P   L+      E ++ H  +V + V+  +G D
Sbjct: 52  IYYDDDVVLVRDMFPKSKMHLLLMTRDP--HLTHV-HPLEIMMKHRSLVEKLVSYVQG-D 107

Query: 276 KSGFRLVINDGKN 314
            SG  L+ ++ +N
Sbjct: 108 LSG--LIFDEARN 118


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 309 CHHLLLNGNQTCPAPPGLPPYERQSTD 229
           C  +LLN +  CP+  G+  Y+   TD
Sbjct: 200 CSDVLLNDDSNCPSKKGINNYQYPRTD 226


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 366 IDVHPGRE-RASDIRSVPHSCHHLLLNGNQTCP 271
           IDVH G +    ++  + H C HLL  G +  P
Sbjct: 50  IDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYP 82


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 288 GNQTCPAPPGLPPYERQSTDDP 223
           GN T P  P +PP    ST  P
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTP 316



 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 288 GNQTCPAPPGLPPYERQSTDDP 223
           GN T P  P +PP    ST  P
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTP 370


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 384 NREATPIDVHPGRERASDIRSVPH 313
           +R +TP+D H  R+R++D +   H
Sbjct: 131 SRPSTPMDNHQERDRSNDFQVTAH 154


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 273 PAPPGLPPYERQSTDDPATAHLHLQL*KAVKL 178
           PAP G   YE+Q+ D+P   +L L   K V++
Sbjct: 523 PAPEGKLFYEKQTGDNPYLKYLLLDPSKHVEI 554


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 240 VARKVATQEGLDKSGFRLVINDGKNGAQSVYHLHVHVL 353
           V  +V  Q  +DK+  ++ ++       S YHLHVH+L
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHY----LPSYYHLHVHIL 248


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 326 ALCPILAIIYY*TETRLVQPLLGCHLTS 243
           A  P    +Y+   TRL++P+L  HL S
Sbjct: 300 AFLPAFYDVYFQCRTRLLKPVLDYHLKS 327


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 321 VPHSCHHLLLNGNQTCPAPPGLP 253
           VPH   H L    +TC   PG+P
Sbjct: 365 VPHLIEHGLGTLRETCKLTPGIP 387


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 318 PHSCHHLLLNGNQTCPAPPGLP 253
           PH C H+ + GN  C   PG P
Sbjct: 93  PHRCPHIAMTGN-VCVYCPGGP 113


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 233 VDCRS*GGNPGGAGQ-VWFPFSNK*WQEWGTERISLAR 343
           +D +S G N  GA Q V F  +   WQ W TE  SL +
Sbjct: 750 LDLKS-GKNHAGANQYVLFEDTPLSWQAWDTEVFSLEK 786


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 285 FRLVINDGKNGAQSVYHLHVHVLGGRQLEWP 377
           F L  +  KN   S+  +H+ +  G+QLE+P
Sbjct: 182 FELPPSQLKNYKDSISTVHIGLQNGQQLEYP 212


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 310 LPSFITKRKPDLSSPSWVATLRATIN 233
           L SF+  + P  SSPS   T+   IN
Sbjct: 50  LQSFVPPQPPSSSSPSTTGTVAVPIN 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,626
Number of Sequences: 5004
Number of extensions: 40284
Number of successful extensions: 123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)