Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B09
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    30   0.23 
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.2  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   5.0  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    25   5.0  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   8.7  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.7  

>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 74  NTFTVSPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLVRTLKQM 208
           N+F +    S+I   H  + +  +IHA+IS ++V+ YL   L++M
Sbjct: 127 NSFVLMQTVSNIVNLHRLKSMDSDIHALIS-MAVRDYLANLLQKM 170


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 352 GSGPVHLIGHHLLGALV 402
           GSGPV L+G H+LG ++
Sbjct: 178 GSGPVLLLGSHILGNIM 194


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 112 SETWDPEAKAEYPRSN----KLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 279
           SE +   A   +P +N      +  + LL    K +  N ++       +++K  + VL+
Sbjct: 265 SEGFHHRASRYWPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQ 324

Query: 280 AGETRHARLDFEFPDA 327
             +  HAR+DF+  D+
Sbjct: 325 EMDKEHARIDFDNVDS 340


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 211 LNVVQVETMSLQESVKIPVA---VLKAGETRHARLDFEFPDAPVIFTLIQGSG 360
           LN +Q  T+SL+ S++I      V+      H R++  F +  +   L++G+G
Sbjct: 556 LNEIQKSTLSLK-SLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 324 CTCHIHSYTGFRTCSFDWSPS 386
           CT   H++ GF +C  D+ P+
Sbjct: 121 CTLITHAHLGFESCVIDYFPA 141


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 112 SETW--DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQV 228
           SE W    +  AE     KL+  Q L+G DAK D L ++ V
Sbjct: 540 SENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMV 579


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 313 EFPDAPVIFTLIQGSGPVHLIGHHLL 390
           EFPD P  F  ++ + P   + H L+
Sbjct: 38  EFPDGPATFVRLKCTNPESKVPHFLM 63


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 344 RVNMTGASGNSKSKRACLVSPAFNTAT---GIFTDSC 243
           ++N   A  NSK+K++ ++     TAT   G   DSC
Sbjct: 695 KLNKAAAVENSKAKKSVVIKKVSGTATLNLGNVKDSC 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,204
Number of Sequences: 5004
Number of extensions: 28994
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)