Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B09
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    28   5.0  
07_03_0915 + 22556522-22556536,22557719-22558177,22559796-225602...    28   5.0  
07_03_0914 + 22554314-22554328,22554586-22555065                       28   5.0  

>10_08_0850 +
           21050164-21050189,21050874-21050979,21051186-21051257,
           21051775-21051828,21052077-21052184,21052653-21052802,
           21052914-21053258,21053361-21054801,21054844-21055675,
           21057060-21057325,21057530-21059603,21060172-21060442,
           21060556-21060990
          Length = 2059

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +1

Query: 28  RVAKSQ*ISEIAMTYEYFYGVTLSESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKAD 207
           ++A+ Q + EI  TY     + LSE       D   +   P S+ L  +  LL      +
Sbjct: 692 KIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDN 751

Query: 208 ELNV-VQVETMSLQESVKIPVAVLKAGET 291
              V VQVE + L  S +      K G+T
Sbjct: 752 HGRVAVQVEEVKLMISGREETKKTKKGQT 780


>07_03_0915 +
           22556522-22556536,22557719-22558177,22559796-22560254,
           22561869-22562348
          Length = 470

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 145 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 249
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 145 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 249
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 253 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 287



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 145 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 249
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 406 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 440


>07_03_0914 + 22554314-22554328,22554586-22555065
          Length = 164

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 145 YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 249
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,465,636
Number of Sequences: 37544
Number of extensions: 201495
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)