Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B09
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    27   6.0  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical
           protein F44E7.4d protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 265 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 402
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 369


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 265 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 402
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 265 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 310


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
           protein F44E7.4a protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 265 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 402
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 369


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 265 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 402
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 369


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 124 DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQ 246
           + EA A   R+ K +   ALL PDA  D  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,720,003
Number of Sequences: 27780
Number of extensions: 175505
Number of successful extensions: 483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)