Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B08
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.39 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   3.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   3.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   3.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   3.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.3  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    24   8.4  

>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 87  TIDLKFCTLFHSYRSSASE 31
           T DL FCT+FH Y +S  E
Sbjct: 165 TYDLSFCTVFHGYLTSILE 183


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 285 ASARSGTRCSSASTSVGTSCTAWRARAVRAPHCKGSCASRSTT 413
           AS  SGT   +ASTS G+S ++    A        S +SR ++
Sbjct: 725 ASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSS 767


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 32  SLALERYEWNKVQNFKSIVPMVHLTWNLARNIRVSDPRLHRAMRTCL 172
           +L+ +  EW++++NF   + ++  + NL      + P   R M T +
Sbjct: 459 TLSCDEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPSPQRYMHTAI 505


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 20  SAEYSLALERYEWNKVQNFKSIVPMVHLTWNLARNIRVSDPRLHR 154
           S+  +L + + + NK+ N K+  PM+HL     R +R+S+  +H+
Sbjct: 754 SSLQNLMVLQLDNNKLTNLKASQPMIHL-----RILRISNNAIHQ 793


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 160 HGAVQPRVGHADVTRQVPR 104
           HG + P + H D  R++PR
Sbjct: 357 HGGLSPSLSHMDDIREIPR 375


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 237 GSTGALAARPRTIAA-PASARSGTRCSSASTSVGTS 341
           GS G+     RT    P + RS  R +S  TS+GTS
Sbjct: 146 GSGGSSVTGKRTAPGNPWAIRSAERLASNPTSIGTS 181


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 404 PRGTGTLAVRGSH 366
           PRG GTL +RG H
Sbjct: 402 PRGDGTLEIRGYH 414


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 125 IRVSD-PRLHRAMRTCLMQTLRAA 193
           +R+SD PR   A+R CL + LR A
Sbjct: 229 LRLSDNPRAREALRHCLPEPLRDA 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,726
Number of Sequences: 5004
Number of extensions: 23677
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)