Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B07
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   1.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.0  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.0  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   4.5  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   7.9  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +1

Query: 79   KYIKKETIKMSLNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLTDWETLN 258
            +Y+++E   + +  IK I   A  C  Y   + Y   Q+  +     +S + +    T+N
Sbjct: 1211 EYMEREDHTLPI-PIKVISAHASKCNVYAKALHYTELQFVQE-TKEEVSISTIESLITIN 1268

Query: 259  KQKKISKAMKAYLERAKEHDEFMKRQ 336
               + S A    L+  KEH +F  ++
Sbjct: 1269 NHLQQSDAAVGMLQYTKEHKQFSLKE 1294


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 441 NKYSIARSTSFCVKVSGSS-PIILAKCLLPSLYSNLLSF 328
           +K  IA++    +K+S SS P+   K LLP L  NLL++
Sbjct: 878 SKREIAKAAIDFIKISVSSFPVECIKPLLPELIPNLLAW 916


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 537  PASSNSAALRAGNTSSGGFMRGRAAESYIPLGNKYSIARSTSF 409
            P S+ S   R G+   GG  RG    +  P GN YS  R   +
Sbjct: 933  PRSNASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGY 975


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 112 LNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLT 240
           L   K +I +A   FYYR+PI        SKF   ++    +T
Sbjct: 221 LQKNKNLISSAVNAFYYRDPIDENYCDRMSKFNQNDLVTTTIT 263


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 208 ITTNISDNNLTDWETLNKQKKISKAMKAYLERAKEHDE 321
           I  ++S+  +T+ + +NK+       K+ +E+ K H+E
Sbjct: 20  IVDHVSEKVITNGKNVNKKVNAEVDGKSMVEKVKTHEE 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,371
Number of Sequences: 5004
Number of extensions: 42278
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)