Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B07
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1052 - 23962374-23963369                                         28   4.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   6.1  
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923...    27   8.1  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    27   8.1  

>08_02_1052 - 23962374-23963369
          Length = 331

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 546 CGMPASSNSAALRAGNTSSGGFMRGRAAESYIPLGN 439
           CG+ AS+ SAA  A  T+S    RGR   +Y  +GN
Sbjct: 172 CGLHASATSAAAAAA-TASPAATRGRGRFAYAWVGN 206


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 449 GIYDSAARPLMKPPEEVFPARKAAEFDEAGMPHHLL 556
           G  D A  P  KPPEEV   RK        +P H +
Sbjct: 858 GAADDAPAPAQKPPEEVDSKRKRVMPRFPNLPAHFM 893


>06_02_0041 + 10889741-10890092,10890161-10890235,10891139-10892341,
            10892970-10893253,10893343-10893459,10894126-10894388,
            10894557-10894725,10894838-10895110,10895674-10895718,
            10896472-10896591,10896926-10896987,10897296-10897318,
            10897911-10898128
          Length = 1067

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 443  PSGIYDSAARPLMKPPEEVFPARKAA 520
            PSG++DS  +    PP  + P R AA
Sbjct: 1038 PSGVFDSTDQECRLPPASINPKRAAA 1063


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 350 KLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIYDSAARPLMKPPEE 496
           K  K     +  E PE+F + DV   IE    SG  ++   P+++PP +
Sbjct: 220 KYAKEVTTVLPSESPESFLENDVSDFIEKEVDSG--ETFELPILEPPSQ 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,780
Number of Sequences: 37544
Number of extensions: 235285
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)