Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B07
         (576 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal...   121   2e-27
BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.        94   4e-19

>BC057240-1|AAH57240.1|  396|Homo sapiens mitochondrial ribosomal
           protein S9 protein.
          Length = 396

 Score =  121 bits (292), Expect = 2e-27
 Identities = 50/76 (65%), Positives = 64/76 (84%)
 Frame = +2

Query: 344 EYKLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIYDSAARPLMKPPEEVFPARKAAE 523
           E+ +GKRHLANMMGEDPETFTQ+D+DRAI YLFPSG+++  ARP+MK PE++FP ++A +
Sbjct: 80  EFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQ 139

Query: 524 FDEAGMPHHLLFYTGK 571
           + E G P H LFYTGK
Sbjct: 140 WGEDGRPFHYLFYTGK 155


>BC047784-1|AAH47784.1|  302|Homo sapiens MRPS9 protein protein.
          Length = 302

 Score = 93.9 bits (223), Expect = 4e-19
 Identities = 38/61 (62%), Positives = 50/61 (81%)
 Frame = +2

Query: 389 DPETFTQKDVDRAIEYLFPSGIYDSAARPLMKPPEEVFPARKAAEFDEAGMPHHLLFYTG 568
           DPETFTQ+D+DRAI YLFPSG+++  ARP+MK PE++FP ++A ++ E G P H LFYTG
Sbjct: 1   DPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTG 60

Query: 569 K 571
           K
Sbjct: 61  K 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,108,986
Number of Sequences: 237096
Number of extensions: 1361403
Number of successful extensions: 3038
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3038
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)