Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B07
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 82 3e-16
U50197-3|AAA91256.2| 327|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006674-4|AAF39940.1| 402|Caenorhabditis elegans Hypothetical ... 28 4.1
U88165-4|AAR30207.1| 700|Caenorhabditis elegans Maternal effect... 28 5.5
U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect... 28 5.5
U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein. 28 5.5
L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF024503-14|AAG24088.2| 292|Caenorhabditis elegans Serpentine r... 27 7.2
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 27 9.5
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 81.8 bits (193), Expect = 3e-16
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +2
Query: 335 NKFEYKLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIYDSAARPLMKPPEEVFPARK 514
++ E++ G+RHLA MM D Q+ +DRAI YLFPSG+ D ARP+M+PP+E+ P +
Sbjct: 52 HRAEFETGRRHLAKMMSLDIHELDQEAIDRAILYLFPSGLTDPNARPVMRPPDEILPKFQ 111
Query: 515 AAEFDEAGMPHHLLFYTGKP 574
FDE G P F+T P
Sbjct: 112 RFTFDEEGKPEGSRFFTLSP 131
>U50197-3|AAA91256.2| 327|Caenorhabditis elegans Hypothetical
protein F25E2.3 protein.
Length = 327
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 443 PSGIYDSAARPLMKPPEEVFPARKAA 520
P I S+ P + PPE++ PAR+AA
Sbjct: 141 PDAIKHSSKMPEVTPPEQLLPAREAA 166
>AC006674-4|AAF39940.1| 402|Caenorhabditis elegans Hypothetical
protein K12H6.11 protein.
Length = 402
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 70 CACKYIKKETIKMSLNSIKRIIPTAK 147
C C+ KKE +K N++KRI+ ++
Sbjct: 355 CLCEACKKEAVKKLENAVKRILKNSR 380
>U88165-4|AAR30207.1| 700|Caenorhabditis elegans Maternal effect
sterile protein3, isoform b protein.
Length = 700
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +1
Query: 112 LNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLTDWETLNKQKKISKAMKA 291
L +I++ +PT RN + + +KF+ N+ D L + ++++ K++
Sbjct: 77 LENIQKTLPTCSDGLEIRNYVKKYGLPEDNKFLVRNVFDKQLLFGKKYVCRRRVIKSIDE 136
Query: 292 YLERAK 309
+ R K
Sbjct: 137 FFPRLK 142
>U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect
sterile protein3, isoform a protein.
Length = 754
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +1
Query: 112 LNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLTDWETLNKQKKISKAMKA 291
L +I++ +PT RN + + +KF+ N+ D L + ++++ K++
Sbjct: 77 LENIQKTLPTCSDGLEIRNYVKKYGLPEDNKFLVRNVFDKQLLFGKKYVCRRRVIKSIDE 136
Query: 292 YLERAK 309
+ R K
Sbjct: 137 FFPRLK 142
>U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein.
Length = 754
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +1
Query: 112 LNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLTDWETLNKQKKISKAMKA 291
L +I++ +PT RN + + +KF+ N+ D L + ++++ K++
Sbjct: 77 LENIQKTLPTCSDGLEIRNYVKKYGLPEDNKFLVRNVFDKQLLFGKKYVCRRRVIKSIDE 136
Query: 292 YLERAK 309
+ R K
Sbjct: 137 FFPRLK 142
>L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical
protein F09G8.8 protein.
Length = 639
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 172 IGYFSSQYKSKFITTN-ISDNNLTDWETLNKQKKISKAMKAYLERAKEHD 318
IGY+ Q KFI N +++N ++W T + K + A L + ++D
Sbjct: 557 IGYYYDQATKKFIWVNGVTNNPYSNWATGHPDVKQGDCVMAKLLKDSKND 606
>AF024503-14|AAG24088.2| 292|Caenorhabditis elegans Serpentine
receptor, class x protein21 protein.
Length = 292
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 496 FFRRLHERTGSRVIYSTRE*ILNSSINIFLRESLWIFSH 380
FF+ L G Y T +++S I +FL SLW F H
Sbjct: 224 FFQGLSMFAGQLTYYLTAP-LVDSKIIVFLLASLWAFVH 261
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = -1
Query: 543 GMPASSNSAALRAGNTSSGGFMRGRAAESYIPLGNKYSIARSTSFCVKVSGSSPIILAKC 364
G+ +S L A N + ++R AE+Y N +AR + GS +I
Sbjct: 141 GICYASTIKYLCAPNDYTDEYVRDSVAENYGL--NVSELARFSLTPYNSDGS--VIHTSI 196
Query: 363 LLPSLYSNLLSFHKFVMLLCSFQISFH 283
+ + S+L++FH +++ CS ++ F+
Sbjct: 197 IFLLIASSLINFHFSIIIFCSLKMHFN 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,943,938
Number of Sequences: 27780
Number of extensions: 230297
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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