Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B07
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.31 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 462 ESYIPLGNKYSIARSTSFCVKVSGSSPIILAKCL 361
           E+YI  GNK S+A S SF +K +  + +  +K L
Sbjct: 547 ETYINSGNKISLATSKSF-IKANSQTEVSNSKKL 579


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 338 KFEYKLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIYD 460
           K EYK GKR++ +   +  E+ T   V   + +    G+ D
Sbjct: 263 KEEYKSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGLKD 303


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 463 CCPSSHEASGRSISSTQSCRIRRSRHAA 546
           C PS   ASGR  S+     +R SR ++
Sbjct: 423 CKPSQRFASGRYYSAYSLHHVRSSRESS 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 70   CACKYIKKETIKMSLNSIKRIIPTAKFCFY 159
            C CK++++ +  +S N+ K +  +  +C+Y
Sbjct: 928  CRCKFLQELSSWVSDNAHKVVDASDVWCYY 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,984
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)