Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B06
         (148 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   1.4  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    24   2.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    23   5.5  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   EQQYLLLKQRHSLKPRLLKSARNLHHELEANDKQLK 115
           E  YLL +   SLK    K  R  HH   ++ K LK
Sbjct: 15  ESNYLLKRVCLSLKLSPCKLTRKFHHACPSSSKVLK 50


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   HEEQQYLLLKQRHSLKPRLLKSARN 76
           H E   LL KQ+H + P L+ S +N
Sbjct: 116 HSEWASLLAKQKHQINP-LMNSEKN 139


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 2    HEEQQYLLLKQRHSLKPRLLKSARNLHHELEANDKQL 112
            HE    LLLK++  LK + ++ A +L  E+ + + QL
Sbjct: 922  HENMSALLLKEKMYLKNQTVEQA-SLKSEIASLNSQL 957


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,522
Number of Sequences: 5004
Number of extensions: 3602
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)