Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B03
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   3.0  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    26   4.0  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   5.2  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   6.9  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   9.1  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.1  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 169 NVWYVRVIISHHHFCLIFIPCHITVYTFDK 80
           ++ ++  I  HH  C++++   + VY FD+
Sbjct: 229 SIGFLITIWLHHRRCVVYMKVCVAVYVFDR 258


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 278 GYLEGFLTRDLIWMHWQNVLEGYCFNKTDVCGLIEEFVDTNEEYIANMT 424
           G L  F    L ++  QN ++    ++  V G ++  +D+N  Y+A  T
Sbjct: 189 GSLSAFSISRLSFLVLQNKIDTLAEHEKSVLGELQNQIDSNLRYVAQRT 237


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +2

Query: 8   VHDKMSRREIYXXXXXXXXXXXXXXVESVYGYVTWNKYEAEVMVTDYYANIPDVFIAKAT 187
           ++ ++ RREI+              +    G  +  K   ++ V D Y  +P +   K T
Sbjct: 233 INPRLCRREIWGTDVYTDDSDIATILAHC-GCFSLLKPVRKIAVVDLYI-LPPLVHYKGT 290

Query: 188 YKNEINSTGWA 220
            KN+I S  W+
Sbjct: 291 RKNQIESRSWS 301


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 257 EKQAYAAGYLEGFLTRDLIWMHWQNVLEGYCFNKTD 364
           E+    AGY E  + R+L   HW   ++ YC +  D
Sbjct: 619 EEAEKLAGY-ENAMLRNLEDNHWDEEVQAYCDSSVD 653


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 175 DENVWYVRVIISHHHFCLIFIPCHITVYT 89
           DEN    +  ISH  F  + +PCHI+++T
Sbjct: 220 DENEVQEQPSISHDTF--LSLPCHISMHT 246


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 344 YCFNKTDVCGLIEEFVDTNEEYIANMTIEHPDDPYWYQ 457
           +  +K D C LIE FV+ +   I + T+    DP  YQ
Sbjct: 67  HLLSKQDACHLIEAFVNVS---ITSPTLLTSVDPVLYQ 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,646
Number of Sequences: 5004
Number of extensions: 43428
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)