Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B03
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    28   5.3  
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558...    27   7.0  
10_06_0116 + 10945231-10945501,10946018-10946241,10946329-109467...    27   9.2  

>06_03_0912 +
           25896152-25896451,25896528-25897296,25897492-25897658,
           25898932-25901013,25901155-25901730,25904503-25905648,
           25907056-25908693
          Length = 2225

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 524 RHLQLHDCTLLQDLPAVCSTASSDTSMDHLDVQ*SYWLCTLHWYPQTLQ 378
           +HL L DCT L+ LP   S +     +  L+V     L  L +  + L+
Sbjct: 595 QHLNLSDCTSLESLPLFSSQSGGLQKLSFLNVSHCSQLVKLSFLEEKLE 643


>12_02_0590 -
           20853040-20853081,20853694-20853918,20854995-20855886,
           20856120-20856122,20856284-20856513
          Length = 463

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 145 ISHHHFCLIFIPCHITVYTF 86
           IS H  CL+ + C +TVY F
Sbjct: 420 ISRHALCLLTLRCMLTVYNF 439


>10_06_0116 +
           10945231-10945501,10946018-10946241,10946329-10946725,
           10946804-10946893,10947118-10947239,10947390-10947428
          Length = 380

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 423 LLNIQMIHTGIR*SCTTYSWKVLQQGTI 506
           L  +  +  G+R SC T SW+  Q G+I
Sbjct: 9   LPTLDRVRRGVRSSCDTESWECFQCGSI 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,175
Number of Sequences: 37544
Number of extensions: 259664
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)