Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B03
(525 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030618-1|AAH30618.1| 589|Homo sapiens hypothetical protein LO... 101 2e-21
BC063561-1|AAH63561.1| 552|Homo sapiens hypothetical protein FL... 56 8e-08
AK026315-1|BAB15442.1| 506|Homo sapiens protein ( Homo sapiens ... 55 2e-07
BC117686-1|AAI17687.1| 1683|Homo sapiens SHPRH protein protein. 30 5.7
AY163808-1|AAO06907.1| 1659|Homo sapiens helicase-like protein p... 30 5.7
AY161136-1|AAO26201.1| 1683|Homo sapiens SNF2 histone linker PHD... 30 5.7
AL451145-1|CAH70765.1| 1683|Homo sapiens SNF2 histone linker PHD... 30 5.7
AL356599-2|CAI41120.1| 1683|Homo sapiens SNF2 histone linker PHD... 30 5.7
AK075318-1|BAC11544.1| 584|Homo sapiens protein ( Homo sapiens ... 30 5.7
AB095943-1|BAC23119.1| 1092|Homo sapiens KIAA2023 protein protein. 30 5.7
>BC030618-1|AAH30618.1| 589|Homo sapiens hypothetical protein
LOC196463 protein.
Length = 589
Score = 101 bits (242), Expect = 2e-21
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Frame = +2
Query: 161 PDVFIAKATYKNEINSTGWAFLELHTSADSSDEKQAYAAGYLEGFLTRDLIWMHWQNVLE 340
PD +A A N I TGWAFLEL TS +D QAYAAG +E ++ +LI+MHW N +
Sbjct: 81 PDA-VAWANLTNAIRETGWAFLELGTSGQYNDSLQAYAAGVVEAAVSEELIYMHWMNTVV 139
Query: 341 GYC--FN-KTDVCGLIEEFVDTNEEYIANMTIEHPDDPYWYQMKLYYIQLEGLAAGY 502
YC F + C ++ F++ N E++ +PD PYW+Q++L +QL+GL Y
Sbjct: 140 NYCGPFEYEVGYCERLKSFLEANLEWMQEEMESNPDSPYWHQVRLTLLQLKGLEDSY 196
>BC063561-1|AAH63561.1| 552|Homo sapiens hypothetical protein
FLJ22662 protein.
Length = 552
Score = 56.0 bits (129), Expect = 8e-08
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Frame = +2
Query: 95 YGYVTWNKYEAEVMVTDYYANIPDVFIAKATYKNEINSTGWAFLELHTSADS---SDEKQ 265
Y W E V V + D + Y N + +TGW LE+ S S+E
Sbjct: 41 YATAYWMPAEKTVQVKNVMDKNGDAY---GFYNNSVKTTGWGILEIRAGYGSQTLSNEII 97
Query: 266 AYAAGYLEGFLTRDLIWMHWQNVLEGYCFNKTDVCGLIEEFVDTNEEYIANMTIEHPDDP 445
+ AG+LEG+LT + H+ N L K + +++F++ +++ E+ D
Sbjct: 98 MFVAGFLEGYLTAPHMNDHYTN-LYPQLITKPSIMDKVQDFMEKQDKWTRKNIKEYKTDS 156
Query: 446 YWYQMKLYYIQLEGLAAG 499
+W Q++GL G
Sbjct: 157 FWRHTGYVMAQIDGLYVG 174
>AK026315-1|BAB15442.1| 506|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22662 fis, clone HSI08080. ).
Length = 506
Score = 54.8 bits (126), Expect = 2e-07
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 188 YKNEINSTGWAFLELHTSADS---SDEKQAYAAGYLEGFLTRDLIWMHWQNVLEGYCFNK 358
Y N + +TGW LE+ S S+E + AG+LEG+LT + H+ N L K
Sbjct: 23 YNNSVKTTGWGILEIRAGYGSQTLSNEIIMFVAGFLEGYLTAPHMNDHYTN-LYPQLITK 81
Query: 359 TDVCGLIEEFVDTNEEYIANMTIEHPDDPYWYQMKLYYIQLEGLAAG 499
+ +++F++ +++ E+ D +W Q++GL G
Sbjct: 82 PSIMDKVQDFMEKQDKWTRKNIKEYKTDSFWRHTGYVMAQIDGLYVG 128
>BC117686-1|AAI17687.1| 1683|Homo sapiens SHPRH protein protein.
Length = 1683
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 545 DTDSEYLPSDTSDDDDDPYYYYYK 568
>AY163808-1|AAO06907.1| 1659|Homo sapiens helicase-like protein
protein.
Length = 1659
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 545 DTDSEYLPSDTSDDDDDPYYYYYK 568
>AY161136-1|AAO26201.1| 1683|Homo sapiens SNF2 histone linker PHD
RING helicase protein.
Length = 1683
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 545 DTDSEYLPSDTSDDDDDPYYYYYK 568
>AL451145-1|CAH70765.1| 1683|Homo sapiens SNF2 histone linker PHD
RING helicase protein.
Length = 1683
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 545 DTDSEYLPSDTSDDDDDPYYYYYK 568
>AL356599-2|CAI41120.1| 1683|Homo sapiens SNF2 histone linker PHD
RING helicase protein.
Length = 1683
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 545 DTDSEYLPSDTSDDDDDPYYYYYK 568
>AK075318-1|BAC11544.1| 584|Homo sapiens protein ( Homo sapiens
cDNA FLJ90837 fis, clone Y79AA1002121, weakly similar to
HISTONE H1. ).
Length = 584
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 545 DTDSEYLPSDTSDDDDDPYYYYYK 568
>AB095943-1|BAC23119.1| 1092|Homo sapiens KIAA2023 protein protein.
Length = 1092
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 392 DTNEEYIANMTIEHPDDPYWYQMK 463
DT+ EY+ + T + DDPY+Y K
Sbjct: 130 DTDSEYLPSDTSDDDDDPYYYYYK 153
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,544,627
Number of Sequences: 237096
Number of extensions: 1536992
Number of successful extensions: 2671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2666
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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