Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B03
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical pr...    94   6e-20
AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical ...    87   5e-18
AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...    86   2e-17
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z83104-4|CAB05478.2|  582|Caenorhabditis elegans Hypothetical
           protein F09B12.3 protein.
          Length = 582

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
 Frame = +2

Query: 173 IAKATYKNEINSTGWAFLELHTSADSSDEKQAYAAGYLEGFLTRDLIWMHWQNVLEGYCF 352
           +A A ++N +N+TGW FLE+ T  +   + QAY+AGYLEG L++ ++  H +N  E YC 
Sbjct: 81  VAVARWQNAVNTTGWTFLEVETKENYCPQLQAYSAGYLEGLLSKTVLTYHLKNAQEDYCK 140

Query: 353 NKTDVCGLIEEFVDTNEEYI-ANMTIEHPDDPYWYQMKLYYIQLEGLAAGY 502
           N T  C  + +F+  N+++I +++    PDD YW  +   Y Q+ GL   Y
Sbjct: 141 NFTGYCSRLSDFLTENQKWIQSSLETVAPDDLYWGAVNRTYHQVSGLIDAY 191


>AC025723-2|AAK29943.1|  581|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.8 protein.
          Length = 581

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
 Frame = +2

Query: 173 IAKATYKNEINSTGWAFLELHTSADSSDEKQAYAAGYLEGFLTRDLIWMHWQNVLEGYCF 352
           +A   Y N++N+TGW  LE+ T A  S + QAY AG  EG LTR  I+ H++N +E  C 
Sbjct: 72  VALGKYSNQVNTTGWGILEIETFASHSYDVQAYGAGVAEGELTRLQIYYHYRNTIETMCN 131

Query: 353 NKTDVCGLIEEFVDTNEEYI-ANMTIEHPDDPYWYQMKLYYIQLEGLAAGYN 505
           N T  C  +  ++  N +++ + +    P DP+W Q+ L + QL G+   Y+
Sbjct: 132 NHTLFCKRLYIYLQQNLDWMRSQVQANPPTDPFWRQVNLTFAQLTGIYDAYS 183


>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = +2

Query: 173 IAKATYKNEINSTGWAFLELHT-SADSSDEKQAYAAGYLEGFLTRDLIWMHWQNVLEGYC 349
           +A A + +E+N TGWAFLE+   S       Q YAAG+ EG  TR LI +H  N + GYC
Sbjct: 52  LATAYFHDEVNQTGWAFLEVDVISPKIPHYLQGYAAGFAEGRATRHLIDLHIINTVNGYC 111

Query: 350 FNKTDVCGLIEEFVDTNEEYIANMTIEHPDDPYWYQMKLYYIQLEGLAAGYNH 508
                 C  + EF+  N +++     E+P+D YW Q+ L   QL GL  GY +
Sbjct: 112 DGAKHFCDELGEFMVDNLKWMEQEIRENPEDEYWQQVNLTVNQLFGLIHGYEN 164


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 101 YVTWNKYEAEVM--VTDYYANIPDVFIAKATYKNEINSTGWAFLELHTSADSSDEKQ 265
           Y  WNK  A  M  +   YAN P+    K+T K E+N      L  +   DS +EK+
Sbjct: 225 YTEWNKTAAFFMQRLGQQYANKPEKKSKKSTEKKELNIENLEDLN-NEDEDSENEKE 280


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 101 YVTWNKYEAEVM--VTDYYANIPDVFIAKATYKNEINSTGWAFLELHTSADSSDEKQ 265
           Y  WNK  A  M  +   YAN P+    K+T K E+N      L  +   DS +EK+
Sbjct: 225 YTEWNKTAAFFMQRLGQQYANKPEKKSKKSTEKKELNIENLEDLN-NEDEDSENEKE 280


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +2

Query: 167 VFIAKATYKNEINSTGWAFLELHTSADSSDEKQAYAAGYLEGFLTRDLIWMHWQNVLEGY 346
           +FIAKA     + +       +H   D  D+ Q      L+GF   + + +    ++E  
Sbjct: 22  LFIAKALIPRLLENPNQ---RIHPPTDLLDDLQINCTNILQGFKNENTLELINTKMIENK 78

Query: 347 CFNKTDVC 370
            +N TD C
Sbjct: 79  MWNSTDRC 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,404
Number of Sequences: 27780
Number of extensions: 238475
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)