Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B02
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    58   5e-10
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   1.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.1  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   6.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.1  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   8.1  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +2

Query: 236 VEGKTNNLGQSVVIARD-KTKVAINADISFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD 412
           V+GKT NLG SVV++R+  +K+A+ A I FS                  DWLRVV++   
Sbjct: 40  VDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKG 99

Query: 413 SYELRYFNI 439
            YELRY+N+
Sbjct: 100 VYELRYYNV 108


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 195 QDVSLSRVCAVNGKFKANLPLGTFAANFATFYSLSYQSS 79
           QD+    +C   G + A +PL   AA FA  Y   Y+ +
Sbjct: 225 QDIQTIMICRFFGGYGACVPLCVVAAAFADMYPNRYRGT 263


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 197 SRMYPSAGCVQSMVNL-RLIFLLA 129
           S MYP   CV+ +V+L RL+++L+
Sbjct: 524 SSMYPQNECVEILVSLVRLLYILS 547


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 333 ISNT*PSVTSRKTIFGT-GSEWWLLHMTHMSFATS 434
           I N     TS K +FG  G  WW+L +T   + T+
Sbjct: 180 ILNNGIKATSTKVLFGLLGLWWWMLFVTASFYHTT 214


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 310 RHFLLKEVSQIPDQALPQEKQSSGLAPSGGFCT*LI*ASLLQHQLLIATMKTMRIKL 480
           R + ++E+ Q    +LP     S  + SG   T     S LQHQ+L   +K+MRI L
Sbjct: 99  RFYQVQEILQNLGYSLPIVGSISETSVSGIMST-CTHGSSLQHQVLPHYIKSMRIML 154


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 295 SRYQRRHFLLKEVSQIPDQALPQEKQSSGLAP 390
           SRY   H+LLK +S +P      E  S  + P
Sbjct: 841 SRYSFFHYLLKRISFLPIHQKSAEAASVDILP 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,143
Number of Sequences: 5004
Number of extensions: 35379
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)