Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_B02
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       62   3e-10
07_03_1662 + 28447419-28447666,28448429-28448573                       60   9e-10
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   4.6  
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    28   4.6  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +2

Query: 242 GKTNNLGQSVVIARDKTKVAINADISFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDS-- 415
           GK  NLG+SV ++RDKTKV + +D  FS                  DWLRV+AS  D   
Sbjct: 55  GKAGNLGESVTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNV 114

Query: 416 YELRYFNI 439
           YELRYFNI
Sbjct: 115 YELRYFNI 122


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +2

Query: 242 GKTNNLGQSVVIARDKTKVAINADISFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDS-- 415
           GK  NLG SV + RDKTKV + +D +FS                  DWLRV+A+  D   
Sbjct: 54  GKAGNLGDSVTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNV 113

Query: 416 YELRYFNI 439
           YELRYFNI
Sbjct: 114 YELRYFNI 121


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 210  EKYLKERVKLKAKQITWGNPLSSPGTRQKSLSTQ 311
            E  + E  K KAKQ+T+G P+  P    +S++ Q
Sbjct: 3021 ETDVAEADKTKAKQMTFGQPVPVPSDATRSVTDQ 3054


>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 36  QLQRSPSQRKCQLHQKTGKKVSKR---WQNSRQRCQEE 140
           +L  S S+R+CQ   K  KK SKR   W   + + QE+
Sbjct: 419 KLSASESERQCQKLVKKEKKDSKRLEMWDRQKAKLQED 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,119
Number of Sequences: 37544
Number of extensions: 240051
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)