Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B02
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal prote... 47 8e-06
Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical p... 28 4.2
Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical pr... 28 4.2
U64847-8|AAQ91904.1| 558|Caenorhabditis elegans Acyltransferase... 28 4.2
U64847-7|AAB04876.1| 718|Caenorhabditis elegans Acyltransferase... 28 4.2
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 28 4.2
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 27 9.7
>U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform a protein.
Length = 130
Score = 46.8 bits (106), Expect = 8e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +2
Query: 236 VEGKTNNLG-QSVVIARDKTKVAINADISFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD 412
V GKT +L +V + K+KV++ +++ FS DWLRVVA +
Sbjct: 51 VNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKN 110
Query: 413 SYELRYFNIN 442
+YE+RYF+IN
Sbjct: 111 TYEVRYFHIN 120
>Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical
protein R186.5 protein.
Length = 479
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 183 LSRVCAVNGKFKANLPLGTFAANFATFYS 97
+ +CA+ G LP+ +NFA FYS
Sbjct: 392 IGSICALAGVLTIALPVPVIVSNFAMFYS 420
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 174 VCAVNGKFKANLPLGTFAANFATFYS 97
+CAV G LP+ +NFA FYS
Sbjct: 425 LCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 174 VCAVNGKFKANLPLGTFAANFATFYS 97
+CAV G LP+ +NFA FYS
Sbjct: 425 LCAVMGVLTIALPVPVIVSNFAMFYS 450
>Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 174 VCAVNGKFKANLPLGTFAANFATFYS 97
VCA+ G LP+ +NFA FYS
Sbjct: 493 VCALMGVLTIALPVPVIVSNFAMFYS 518
>Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 174 VCAVNGKFKANLPLGTFAANFATFYS 97
VCA+ G LP+ +NFA FYS
Sbjct: 493 VCALMGVLTIALPVPVIVSNFAMFYS 518
>U64847-8|AAQ91904.1| 558|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform b protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 100 LTFLPVFWCNWHF 62
L +L + WCNWHF
Sbjct: 11 LDYLLITWCNWHF 23
>U64847-7|AAB04876.1| 718|Caenorhabditis elegans
Acyltransferase-like protein 6,isoform a protein.
Length = 718
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 100 LTFLPVFWCNWHF 62
L +L + WCNWHF
Sbjct: 171 LDYLLITWCNWHF 183
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 174 VCAVNGKFKANLPLGTFAANFATFYS 97
+CAV G LP+ +NFA FYS
Sbjct: 423 LCAVMGVLTIALPVPVIVSNFAMFYS 448
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 225 ERVKLKAKQITWGNPLSSPGTRQKSLSTQTFPSQRGI 335
+ + A+ +WG +SP RQ T+ +RGI
Sbjct: 119 DAINFAARTFSWGPNFNSPKPRQVFRDISTYSYERGI 155
>Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical
protein ZK666.7 protein.
Length = 403
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 252 FVLPST*HVLSSISQSSNIQDVSLSRVC 169
F+L T + S +SQSSN QD + RVC
Sbjct: 10 FLLGITFCLGSPVSQSSNCQDGYMDRVC 37
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 351 SVTSRKTIFGTGSEWWLLHMTHM 419
SV + IFGT WWL++ T +
Sbjct: 170 SVIAMPQIFGTEDLWWLIYATEI 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,766
Number of Sequences: 27780
Number of extensions: 208137
Number of successful extensions: 555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -