Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_B01
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 129 3e-31
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 66 2e-12
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 66 2e-12
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 57 2e-09
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 56 3e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 35 0.009
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 34 0.012
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 32 0.064
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 27 1.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 2.4
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 129 bits (311), Expect = 3e-31
Identities = 66/113 (58%), Positives = 80/113 (70%)
Frame = +2
Query: 8 GRGRCRDLVSLAVARAAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKAR 187
G G SLAV + AEKI +DQYS AFADALD P+ALAENSGLS I+AL+ VKAR
Sbjct: 423 GGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKAR 482
Query: 188 QVTENNPNLGIDCMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDV 346
V EN LGIDC+ SNDM+ VI+ L KKQQ+ LATQL +M+LK++D+
Sbjct: 483 HVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDI 535
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 66.5 bits (155), Expect = 2e-12
Identities = 39/115 (33%), Positives = 59/115 (51%)
Frame = +2
Query: 8 GRGRCRDLVSLAVARAAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKAR 187
G G VS+ +A A I + Q+ YRA ADA++ P L +N G +PI AL+E++A+
Sbjct: 408 GGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAK 467
Query: 188 QVTENNPNLGIDCMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDVRS 352
E + GID DM V E K Q + A + ++L++DD+ S
Sbjct: 468 H-AEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVS 521
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = +2
Query: 8 GRGRCRDLVSLAVARAAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKAR 187
G G + + + EK + Q++ + + +A + P ++EN+GL P D +S++ A
Sbjct: 411 GAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAA 470
Query: 188 QVTENNPNLGID--CMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDV 346
EN ++G+D C + + D K + + L +KK + LAT+ V +L +D V
Sbjct: 471 HHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQV 525
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +2
Query: 56 AEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGN 235
A ++ + RAF++AL+ P+ LAEN+GL+ I ++E+++R GI+
Sbjct: 428 ARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKG 486
Query: 236 DSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDV 346
++ NV++ L + LA + KMI+KIDD+
Sbjct: 487 IVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 56.0 bits (129), Expect = 3e-09
Identities = 32/118 (27%), Positives = 61/118 (51%)
Frame = +2
Query: 5 IGRGRCRDLVSLAVARAAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKA 184
+G G L++ AV AA + AFA AL P LA+N+G + ++++KA
Sbjct: 404 LGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKA 463
Query: 185 RQVTENNPNLGIDCMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDVRSPA 358
+ N +G+D + DM+A ++E+L K+ V+ ++ +++L++D + A
Sbjct: 464 AHY-DGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILKAA 520
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 34.7 bits (76), Expect = 0.009
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Frame = +2
Query: 8 GRGRCRDLVSLAVARAAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKAR 187
G G C +S + + IS Q AFA +L+ P L +N+G + L++++ +
Sbjct: 413 GGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQ 472
Query: 188 QVT-ENNPNLGIDCMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILKIDD 343
E + +D G +N K V E K + AT+ +IL +D+
Sbjct: 473 HAKGEMWAGVDMDSEGVANNFEKF--VWEPSTVKSNAILSATEAATLILSVDE 523
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 34.3 bits (75), Expect = 0.012
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Frame = +2
Query: 8 GRGRCRDLVSLAVARAAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKAR 187
G G +S+ + A + S +Q + FA AL P LA N+ + ++++A
Sbjct: 416 GGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAY 475
Query: 188 QVTENNP-----------NLGIDCMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILK 334
N N G+D + D V+E SK + + A + IL+
Sbjct: 476 HAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILR 535
Query: 335 ID 340
ID
Sbjct: 536 ID 537
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 31.9 bits (69), Expect = 0.064
Identities = 21/98 (21%), Positives = 42/98 (42%)
Frame = +2
Query: 53 AAEKISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMG 232
AA+++ + A+ADAL P LA NS DA+ V ++ +G+D
Sbjct: 426 AAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAI--VALQEEASEGYKVGLDLKT 483
Query: 233 NDSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDV 346
D + + ++ + + AT + ++ +D +
Sbjct: 484 GMPFDPEVEGIYDNYRVIRHMLHSATVIASNLISVDQI 521
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 160 RRAFRGEGPTGDREQSKSWHRLYGQ*FKRHESLEC-NRIP 276
+RA+ E +G S W LY Q KR+ EC R+P
Sbjct: 263 QRAYGYEDASGKVLDSAEWLNLYSQLAKRYPKSECPTRLP 302
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 2.4
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +2
Query: 125 MALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDSNDMKALNVIESLHSKKQQVAL 304
M EN DA+ V R+VT + +DC G D N +KA V + Q + +
Sbjct: 1038 MLTGENPEELQADAIVPVNVRRVTNRFVAVKLDC-GIDGN-IKADEVSDDFIPPPQLLQV 1095
Query: 305 ATQLVKMILKIDDVRSPAD 361
+ +I+ +D+ D
Sbjct: 1096 GQTVEGVIISLDEANFMVD 1114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,288
Number of Sequences: 5004
Number of extensions: 35702
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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