Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A21
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 77 5e-16
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 64 3e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 53 8e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 1e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 41 3e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 41 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 1e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 38 3e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.007
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 33 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 33 0.009
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 33 0.012
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.027
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 31 0.027
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 31 0.027
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.047
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 30 0.062
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 29 0.14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 29 0.14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 0.25
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 28 0.33
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 27 0.57
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 2.3
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 3.1
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 3.1
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 24 4.0
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 24 5.3
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 5.3
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 23 9.3
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 23 9.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 77.0 bits (181), Expect = 5e-16
Identities = 46/83 (55%), Positives = 54/83 (65%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFWQFILCS*YMCVW 204
KTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ ++F + CV+
Sbjct: 172 KTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR-NTCVY 230
Query: 205 RCP*KENRPVILERGVEIVIATP 273
+ + L RGVEI IATP
Sbjct: 231 GGVPRGPQIRDLIRGVEICIATP 253
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 64.5 bits (150), Expect = 3e-12
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFWQFILCS*YMCVW 204
KT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F + +
Sbjct: 468 KTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYG 527
Query: 205 RCP*KENRPVILERGVEIVIATP 273
P K+ + L+RG EIV+ TP
Sbjct: 528 GAPIKD-QIADLKRGAEIVVCTP 549
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.2 bits (122), Expect = 8e-09
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVASEFWQFILCS*YM 195
KT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ ++F + + +
Sbjct: 299 KTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL---GFR 355
Query: 196 CVWRCP*K--ENRPVILERGVEIVIATP 273
CV E + + +G IV+ATP
Sbjct: 356 CVSVVGGHAFEEQSFQMSQGAHIVVATP 383
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 42.7 bits (96), Expect = 1e-05
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVASEFWQFILCS*YM- 195
KTLAY+LP + + P R G A+++APTREL QQI VA++ L +
Sbjct: 191 KTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVS 250
Query: 196 C-VWRCP*KENRPVILERGVEIVIATP 273
C V K++ + +GV I+I TP
Sbjct: 251 CNVIGGEKKKSEKARIRKGVNILIGTP 277
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.1 bits (92), Expect = 3e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +1
Query: 103 ALVLAPTRELAQQIQQVASEFWQFILCS*YMCVWRCP*KENRPVILERGVEIVIATPVEI 282
AL+LAPTRELAQQIQ+V + + C+ +++ L+ GV +V+ TP +
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDM-AALQAGVHVVVGTPGRV 148
Query: 283 N 285
+
Sbjct: 149 H 149
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 40.7 bits (91), Expect = 4e-05
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVASEFWQFILCS*YM-- 195
KT AY++P + + Q I G AL+L PTRELAQQ+ V + F CS ++
Sbjct: 64 KTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAF--CSKHIRF 121
Query: 196 --CVWRCP*KENRPVILERGVEIVIATP 273
RP++L+ +IVIATP
Sbjct: 122 INVATNSSDTVQRPLLLDL-PDIVIATP 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 39.1 bits (87), Expect = 1e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 162
KTLAY+LP + + G G AL++APTRELA QI V E
Sbjct: 51 KTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 37.9 bits (84), Expect = 3e-04
Identities = 27/83 (32%), Positives = 42/83 (50%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFWQFILCS*YMCVW 204
KT A+I+P + + +P ++ L+L PTRELA Q VA++ F +C+
Sbjct: 309 KTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
Query: 205 RCP*KENRPVILERGVEIVIATP 273
K + +R +IVIATP
Sbjct: 367 GLSLKLQEQELRKR-PDIVIATP 388
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.5 bits (73), Expect = 0.007
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 25 KTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFWQFILCS*YMC 198
KTLA+++P I ++ P R G G I +++PTRELA QI VA E ++ + +
Sbjct: 139 KTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQTFGIV 195
Query: 199 VWRCP*KENRPVILERGVEIVIATP 273
+ + ++ +GV +++ATP
Sbjct: 196 IGGANRRAEADKLV-KGVNLLVATP 219
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 33.5 bits (73), Expect = 0.007
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 4 CMNSARCKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 162
C + KT+AY+ P + + P G A+++APTREL +QI + A +
Sbjct: 89 CAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQAEK 137
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 33.1 bits (72), Expect = 0.009
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 25 KTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 150
KT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 96 KTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 32.7 bits (71), Expect = 0.012
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 165
KT A+++P I H+ + AL+L+P RELA Q +V +F
Sbjct: 119 KTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDF 162
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 31.5 bits (68), Expect = 0.027
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 150
KT A+ LP I + P G AL+L PTRELA QI +
Sbjct: 57 KTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDE 93
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 31.5 bits (68), Expect = 0.027
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFWQF 174
KT A+ L + ++ P P A+ LAP+RELA+QI V +E ++
Sbjct: 166 KTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKY 210
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 31.5 bits (68), Expect = 0.027
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 141
KTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 89 KTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.7 bits (66), Expect = 0.047
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 150
KTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 172 KTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 30.3 bits (65), Expect = 0.062
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 156
KTLA++L A + P +++L+PTRELA QI + A
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.1 bits (62), Expect = 0.14
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 103 ALVLAPTRELAQQIQQV 153
AL+L+PTRELA QIQ V
Sbjct: 92 ALILSPTRELAVQIQNV 108
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.14
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 141
KT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 215 KTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 0.25
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 97 PIALVLAPTRELAQQIQQVASEF 165
P L+LAPTREL QI + + +F
Sbjct: 256 PTTLILAPTRELVCQIHEESRKF 278
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 0.33
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 25 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 153
KT A+++P++ ++ + + L+L PTRELA Q QV
Sbjct: 94 KTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQV 131
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 0.57
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 CCMNSARCKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVASEFWQFI 177
C S KT ++L + I P+ DG ++ LVL TRELA QI+ + F +++
Sbjct: 93 CQAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYL 146
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 2.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 122 QENLLNKYSRLLQNFGNSSYVRNTCVFGGAPKRRTGP 232
Q L N+ SRL+ F +S Y + G+P+ R P
Sbjct: 183 QRQLENERSRLIARFSHSLYSFQHGLSFGSPQNRNTP 219
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 3.1
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 278 STGVAITISTPLSKITGLFSF*GHLQTHMYYEHKMNCQNSEATCCIC*ASSLVGAR 111
++GV + S K+T S H + K++CQN + TC I + G R
Sbjct: 416 ASGVCTSASRQCKKLTNFSSLSCHSDSC-----KVSCQNEDGTCFISAKDYIDGTR 466
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 254 STPLSKITGLFSF*GHLQTHMYYEHKMNCQN 162
ST L+K+ +F HL+ Y+ + C+N
Sbjct: 311 STKLAKVLKRIAFLEHLENDELYDIRQKCKN 341
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 24.2 bits (50), Expect = 4.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 102 CISSSSNKRTCSTNTAGCFRILAIHLMFVIHVCLEVPLKGEQARDF 239
CI S N+ + S + G F L V+H + + ++G DF
Sbjct: 195 CIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLEDF 240
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 194 CVFGGAPKRRTG 229
CVF PKRRTG
Sbjct: 38 CVFTARPKRRTG 49
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 23.8 bits (49), Expect = 5.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1
Query: 243 FQNHGPVLLLGAPPNTH 193
F+NHGPV ++ A P+++
Sbjct: 61 FENHGPVQVMLAKPSSN 77
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 108 SSSSNKRTCSTNTAGC 155
S SSN +TC +N GC
Sbjct: 21 SPSSNFKTCVSNENGC 36
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 31 LAYILPAIVHINNQPPIRRGDGPIALVLAPTR 126
L +++P +N PP++R G + P R
Sbjct: 189 LQHVMPNAEIFSNTPPLKRFRGDAGMTQMPLR 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,227
Number of Sequences: 5004
Number of extensions: 21212
Number of successful extensions: 80
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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