Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A21
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   0.78 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 0.78
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 97  PIALVLAPTRELAQQIQQVASEF 165
           P  ++++PTREL  QI Q   +F
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKF 296


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 125 ENLLNKYSRLLQNFGNSS 178
           ++LL+ Y+RL++  GN+S
Sbjct: 26  DDLLSNYNRLIRPVGNNS 43


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 111 SSSNKRTCSTNTAGCF 158
           SSS   TCS +T  CF
Sbjct: 285 SSSASTTCSGHTVRCF 300


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 134 LNKYSRLLQNFGNSSYVRNTCV 199
           L+  + +++NF  S   RN+C+
Sbjct: 359 LDSMNAVIRNFNESENRRNSCL 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,941
Number of Sequences: 438
Number of extensions: 1329
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)