Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A20
         (281 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF432068-1|AAP97306.1|  504|Homo sapiens unknown protein.              30   1.6  
BC052962-1|AAH52962.1| 1585|Homo sapiens hypothetical protein FL...    29   2.7  
AK097562-1|BAC05103.1|  720|Homo sapiens protein ( Homo sapiens ...    29   2.7  
AY369208-1|AAQ73312.1|  956|Homo sapiens MAM domain-containing g...    28   4.8  
AY358125-1|AAQ88492.1|  937|Homo sapiens MAM-domain protein prot...    28   4.8  
AY328482-1|AAP97010.1|  571|Homo sapiens MAM domain containing 1...    28   4.8  

>AF432068-1|AAP97306.1|  504|Homo sapiens unknown protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 113 VRLTLSFLFFAVAVVNATSILDYFNWEDSKSLIQ-LPELRDDQPNRNCMCKGAACVC 280
           VRLT  FLF  +A +       +F  E  KSLI  L  L D  P     C+    VC
Sbjct: 322 VRLTAIFLFEDLAPLTGRRWKTFFAEEIKKSLISFLLHLWDPNPKIGVACRDVLMVC 378


>BC052962-1|AAH52962.1| 1585|Homo sapiens hypothetical protein
            FLJ40243 protein.
          Length = 1585

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 113  VRLTLSFLFFAVAVVNATSILDYFNWEDSKSLIQ-LPELRDDQPNRNCMCKGAACVC 280
            VRLT  FLF  +A +       +F  E  KSLI  L  L D  P     C+    VC
Sbjct: 1403 VRLTAIFLFEDLAPLTGRRWKIFFAEEIKKSLISFLLHLWDPNPKIGVACRDVLMVC 1459


>AK097562-1|BAC05103.1|  720|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40243 fis, clone TESTI2023947. ).
          Length = 720

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 113 VRLTLSFLFFAVAVVNATSILDYFNWEDSKSLIQ-LPELRDDQPNRNCMCKGAACVC 280
           VRLT  FLF  +A +       +F  E  KSLI  L  L D  P     C+    VC
Sbjct: 538 VRLTAIFLFEDLAPLTGRRWKIFFAEEIKKSLISFLLHLWDPNPKIGVACRDVLMVC 594


>AY369208-1|AAQ73312.1|  956|Homo sapiens MAM domain-containing
           glycosylphosphatidylinositol anchor 2 protein.
          Length = 956

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  NS*FCLSFFFNTTDQHVGQTNAFV 132
           N+ +C SFF++   QH+G  N ++
Sbjct: 832 NTAYCFSFFYHMYGQHIGVLNVYL 855


>AY358125-1|AAQ88492.1|  937|Homo sapiens MAM-domain protein
           protein.
          Length = 937

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  NS*FCLSFFFNTTDQHVGQTNAFV 132
           N+ +C SFF++   QH+G  N ++
Sbjct: 813 NTAYCFSFFYHMYGQHIGVLNVYL 836


>AY328482-1|AAP97010.1|  571|Homo sapiens MAM domain containing 1
           protein.
          Length = 571

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  NS*FCLSFFFNTTDQHVGQTNAFV 132
           N+ +C SFF++   QH+G  N ++
Sbjct: 447 NTAYCFSFFYHMYGQHIGVLNVYL 470


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,253,181
Number of Sequences: 237096
Number of extensions: 481167
Number of successful extensions: 4750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4750
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)