Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A19
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   1.1  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    25   2.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   2.6  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    24   3.5  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    24   4.6  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          23   6.1  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    23   8.0  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 215 NANVKFRAQMPRITRKSAYKH 153
           N  ++F+ Q+P ++R++ Y+H
Sbjct: 141 NLLIQFQIQVPNVSRRTVYRH 161


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 179 ITRKSAYKHNVKTIDVFFRKK*EYVSNKVFLELKRLIKMICIFLY 45
           +  K  Y+ N +T ++    + +Y+   + L LKRL  + CI LY
Sbjct: 80  LATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRL-GIDCIDLY 123


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 74  IALILRTLYSIHTLIFYGKIHLLSL 148
           + L+L TL+ I+T  FY  + L  L
Sbjct: 296 LVLVLLTLFCIYTAAFYRSVRLARL 320


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 62  SF*SIALILRTLYSIHTLIFYGKIHLLSLHYVYTHS 169
           SF  ++ I+   +SIH L+ +GK+  L L+   T S
Sbjct: 414 SFVILSSIIVHGFSIHVLVIWGKLKSLYLNRKVTKS 449


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 125  GKIHLLSLHYVYTHSFA*CEAFEREI*HSRYSETARNGVALKR 253
            G +  L    +Y    A C A E  I H +  E  R+G ALK+
Sbjct: 1239 GSLLCLGAIAIYDEDDAVCSAIEDSIAHLKKDEVLRSG-ALKQ 1280


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 73  NRFNSK-NTLFDTYSYFLRKNTSIVFTLCLY 162
           N F  K N  FD++  ++RK     F +C Y
Sbjct: 36  NLFRGKPNDEFDSFMEYMRKPLPTTFRICGY 66


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 268 IYSNTPL*RDPVTRGFTITRMSN 200
           + +NT    DP++R + +TR++N
Sbjct: 152 VLNNTEPPNDPLSRVYDVTRLTN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,715
Number of Sequences: 5004
Number of extensions: 17405
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)