Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A19
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0831 + 8086470-8087354,8087441-8087730,8096373-8096412,809...    26   3.7  
06_03_0556 - 22097423-22097445,22097579-22097613,22097873-220979...    26   4.9  
01_06_0921 - 33017892-33018953                                         26   4.9  

>08_01_0831 +
           8086470-8087354,8087441-8087730,8096373-8096412,
           8096878-8096957,8099643-8099733,8099989-8100052,
           8100553-8100818
          Length = 571

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 245 ARPRYARFHYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSNKV 93
           +RP++   H N   K   Q P + R     ++    + + R+  E+V N V
Sbjct: 391 SRPKFPDAHTNVLTKPNRQAPAVPRNGRGPYDCSIFNFYSRRCAEHVMNAV 441


>06_03_0556 -
           22097423-22097445,22097579-22097613,22097873-22097941,
           22113969-22114807
          Length = 321

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 228 AVSL*RECQISRSNASHYAKECV 160
           AVSL RE  +++SN S Y   CV
Sbjct: 193 AVSLHREFWVAKSNRSQYEVRCV 215


>01_06_0921 - 33017892-33018953
          Length = 353

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 228 AVSL*RECQISRSNASHYAKECV 160
           AVSL RE  +++SN S Y   CV
Sbjct: 193 AVSLHREFWVAKSNRSQYEVRCV 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,705,942
Number of Sequences: 37544
Number of extensions: 84987
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)