Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A18
(243 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 92 8e-21
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 92 8e-21
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 59 9e-11
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 59 9e-11
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 59 9e-11
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 31 0.028
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 29 0.11
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 24 2.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 24 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 5.6
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 23 5.6
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 23 7.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 22 9.9
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 92.3 bits (219), Expect = 8e-21
Identities = 45/78 (57%), Positives = 51/78 (65%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVL 185
IFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP LAVL
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVL 103
Query: 186 RYYKVDENGKIHRLRREC 239
+YYKV+++G + RLRREC
Sbjct: 104 KYYKVEDDGSVKRLRREC 121
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 92.3 bits (219), Expect = 8e-21
Identities = 45/78 (57%), Positives = 51/78 (65%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVL 185
IFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP LAVL
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVL 103
Query: 186 RYYKVDENGKIHRLRREC 239
+YYKV+++G + RLRREC
Sbjct: 104 KYYKVEDDGSVKRLRREC 121
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 196 IFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 58.8 bits (136), Expect = 9e-11
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 348 IFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 30.7 bits (66), Expect = 0.028
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
I+AGKQ+ D + Y+++ S LHLV
Sbjct: 44 IYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 0.11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
I+AG+ L+D +L Y IQ ++HLV
Sbjct: 47 IYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -1
Query: 102 HRAGGAL-SGASTPSGYCN 49
H +GG + SGA+TP+ Y N
Sbjct: 235 HTSGGGVHSGAATPNAYVN 253
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 36 DHLPTVYRRRSL 1
DHLP+V RRRS+
Sbjct: 611 DHLPSVKRRRSI 622
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 18 KQLEDGRTLSDYNIQKESTL 77
KQL+DG+ +SD E TL
Sbjct: 4366 KQLQDGQDISDIKQTGEDTL 4385
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 93 GGALSGASTPSGYCNQRGF 37
GG G S GY N RGF
Sbjct: 95 GGREGGYSNGGGYRNNRGF 113
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 22.6 bits (46), Expect = 7.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 183 LRYYKVDENGKIHRLRR 233
+ YY +DEN +I LRR
Sbjct: 799 MAYYLIDENKEISILRR 815
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 12 AGKQLEDGRTLSDYNI 59
AGK+L+ R L DY+I
Sbjct: 484 AGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.120 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,155
Number of Sequences: 5004
Number of extensions: 7848
Number of successful extensions: 31
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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