Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A18
(243 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 59 5e-10
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 59 5e-10
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 59 5e-10
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 59 5e-10
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 59 5e-10
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 59 5e-10
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 59 5e-10
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 36 0.005
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 35 0.009
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 30 0.19
Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical pr... 29 0.58
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical pr... 28 0.77
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 26 3.1
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 25 5.4
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 25 5.4
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 25 5.4
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 25 5.4
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 25 5.4
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 25 5.4
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z71262-2|CAA95809.1| 189|Caenorhabditis elegans Hypothetical pr... 25 9.4
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 196 IFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 348 IFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 424 IFAGKQLEDGRTLSDYNIQKESTLHLV 450
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 196 IFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 348 IFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 424 IFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 500 IFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 576 IFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 652 IFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 728 IFAGKQLEDGRTLSDYNIQKESTLHLV 754
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 804 IFAGKQLEDGRTLSDYNIQKESTLHLV 830
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 196 IFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 348 IFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 424 IFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 500 IFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 576 IFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 652 IFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 728 IFAGKQLEDGRTLSDYNIQKESTLHLV 754
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQK+STLHLV
Sbjct: 804 IFAGKQLEDGRTLSDYNIQKQSTLHLV 830
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 58.8 bits (136), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLV 70
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 58.8 bits (136), Expect = 5e-10
Identities = 32/77 (41%), Positives = 42/77 (54%)
Frame = +3
Query: 9 FAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLR 188
+AG+QLED SD I E+T+++ Y+TP LAVL+
Sbjct: 43 YAGRQLED----SDCGIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLK 98
Query: 189 YYKVDENGKIHRLRREC 239
YYK+DENGKI RLR+EC
Sbjct: 99 YYKIDENGKITRLRKEC 115
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 58.8 bits (136), Expect = 5e-10
Identities = 32/77 (41%), Positives = 42/77 (54%)
Frame = +3
Query: 9 FAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLR 188
+AG+QLED SD I E+T+++ Y+TP LAVL+
Sbjct: 43 YAGRQLED----SDCGIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLK 98
Query: 189 YYKVDENGKIHRLRREC 239
YYK+DENGKI RLR+EC
Sbjct: 99 YYKIDENGKITRLRKEC 115
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IFAGKQ+ D +T +DY + S LHLV
Sbjct: 44 IFAGKQMNDDKTAADYKVLGGSVLHLV 70
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 34.7 bits (76), Expect = 0.009
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 9 FAGKQLEDGRTLSDYNIQKESTL 77
F+GK+LED ++ DYNIQK ST+
Sbjct: 197 FSGKRLEDHCSIGDYNIQKSSTI 219
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHLV 86
IF QLE+ R L YNI+ E +HLV
Sbjct: 204 IFGRAQLENDRALFAYNIRDEDIIHLV 230
Score = 28.3 bits (60), Expect = 0.77
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 27 EDGRTLSDYNIQKESTLHL 83
+D RT+SDYNI+ STL L
Sbjct: 135 KDQRTISDYNIKNGSTLRL 153
>Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical
protein F34H10.1 protein.
Length = 142
Score = 28.7 bits (61), Expect = 0.58
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 45 SDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRYYKVDENGKIHR 224
SD I+ +T+++ Y+ P +Y+K+DENGKI R
Sbjct: 52 SDCGIKAAATIYVNCELLGGAKKRKKKVYTIPKKNNISQRKSSSPSPKYFKIDENGKISR 111
Query: 225 L 227
L
Sbjct: 112 L 112
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHL 83
+ K LED TL+ YNIQ+ STL L
Sbjct: 216 VLRDKVLEDDHTLAYYNIQEGSTLGL 241
>Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical
protein K08C9.7 protein.
Length = 154
Score = 28.3 bits (60), Expect = 0.77
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 186 RYYKVDENGKIHRL 227
+Y+K+DENGKI RL
Sbjct: 111 KYFKIDENGKISRL 124
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 26.2 bits (55), Expect = 3.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 9 FAGKQLEDGRTLSDYNIQKESTLHL 83
+ G++L+D R++ YNI + ++L
Sbjct: 131 YGGQKLQDNRSIGSYNIDQSREIYL 155
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 18 KQLEDGRTLSDYNIQKESTL 77
K LED TL+ YNI++ ST+
Sbjct: 209 KFLEDDHTLAHYNIREGSTI 228
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 26 GRWSNPL*LQYPEGVDAPLSAPPARW 103
GRW+ + P G P+ PP RW
Sbjct: 824 GRWTTLMTEWRPYGWKRPVGRPPMRW 849
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 96 AGGALSGASTPSGYCNQRGFDHLPTVY 16
A G A+T GYC GFD+ P VY
Sbjct: 410 ACGFCHDANTKQGYCLPAGFDN-PEVY 435
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 26 GRWSNPL*LQYPEGVDAPLSAPPARW 103
GRW+ + P G P+ PP RW
Sbjct: 999 GRWTTLMTEWRPYGWKRPVGRPPMRW 1024
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 26 GRWSNPL*LQYPEGVDAPLSAPPARW 103
GRW+ + P G P+ PP RW
Sbjct: 738 GRWTTLMTEWRPYGWKRPVGRPPMRW 763
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 26 GRWSNPL*LQYPEGVDAPLSAPPARW 103
GRW+ + P G P+ PP RW
Sbjct: 350 GRWTTLMTEWRPYGWKRPVGRPPMRW 375
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 6 IFAGKQLEDGRTLSDYNIQKESTLHL 83
+ GK LED +L+ YNIQ+ + + L
Sbjct: 239 VLRGKLLEDHHSLAYYNIQEGALIWL 264
>Z71262-2|CAA95809.1| 189|Caenorhabditis elegans Hypothetical
protein F22D6.2 protein.
Length = 189
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 99 RAGGALSGASTPSGYCNQ 46
RAG GAS GYC+Q
Sbjct: 15 RAGCGFFGASATEGYCSQ 32
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 14 R*TVGRWSNPL*LQYPEGVDAPLSAPPARW 103
R T GRW+ + P P+ PP RW
Sbjct: 131 RRTDGRWTTLMNDWCPRDEKRPVGRPPMRW 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.308 0.120 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,310,077
Number of Sequences: 27780
Number of extensions: 47908
Number of successful extensions: 151
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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