Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A18
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   2.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   3.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   3.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   8.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   8.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   8.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -3

Query: 181 TASLTFFFLCVIFLGV 134
           ++S++F+  C++ LG+
Sbjct: 196 SSSISFYVPCIVMLGI 211


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 177 AVLRYYKVDENGK 215
           A+  YYK+  NGK
Sbjct: 31  AIKGYYKISGNGK 43


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 78  GASTPSGYCNQRGFDHL 28
           G   P GY   +GF HL
Sbjct: 78  GLEEPKGYTLFKGFVHL 94


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 177 AVLRYYKVDENGK 215
           A+  YYK+  NGK
Sbjct: 31  AIKGYYKISGNGK 43


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 73 VDSFWIL*SERVRPSSNCLPAKI 5
          +DSF +   +RVRP+    P ++
Sbjct: 16 LDSFSVSYDKRVRPNYGGPPVEV 38


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 73 VDSFWIL*SERVRPSSNCLPAKI 5
          +DSF +   +RVRP+    P ++
Sbjct: 16 LDSFSVSYDKRVRPNYGGPPVEV 38


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 189 YYKVDENGKIHRLRRE 236
           YY   E+GKI+  ++E
Sbjct: 794 YYSPVEDGKIYSEKKE 809


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.120    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,130
Number of Sequences: 438
Number of extensions: 608
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.5 bits)