Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A16
(324 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 0.23
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 1.6
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 2.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 2.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 2.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 2.1
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 21 4.9
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 20 6.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 20 6.5
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 20 6.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 8.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 8.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 8.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 20 8.6
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 25.0 bits (52), Expect = 0.23
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 115 TMTTPASRTTSPNPTPVTSRANPRP 189
T TT + TT+PN T S P P
Sbjct: 667 TTTTTTTTTTTPNTTQNASATTPPP 691
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 1.6
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +1
Query: 124 TPASRTTSPNPTPVTSRANPRPVSEAPVTG 213
+P T+ +T + P P AP+ G
Sbjct: 1369 SPQITLTATTTNSLTMKVRPHPTDNAPIHG 1398
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 2.1
Identities = 8/29 (27%), Positives = 10/29 (34%)
Frame = +1
Query: 127 PASRTTSPNPTPVTSRANPRPVSEAPVTG 213
P TT PN + P P + G
Sbjct: 414 PTGATTGPNEIVTCTNCGPNPCTHTTTNG 442
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 2.1
Identities = 8/29 (27%), Positives = 10/29 (34%)
Frame = +1
Query: 127 PASRTTSPNPTPVTSRANPRPVSEAPVTG 213
P TT PN + P P + G
Sbjct: 400 PTGATTGPNEIVTCTNCGPNPCTHTTTNG 428
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 2.1
Identities = 8/29 (27%), Positives = 10/29 (34%)
Frame = +1
Query: 127 PASRTTSPNPTPVTSRANPRPVSEAPVTG 213
P TT PN + P P + G
Sbjct: 434 PTGATTGPNEIVTCTNCGPNPCTHTTTNG 462
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 2.1
Identities = 8/29 (27%), Positives = 10/29 (34%)
Frame = +1
Query: 127 PASRTTSPNPTPVTSRANPRPVSEAPVTG 213
P TT PN + P P + G
Sbjct: 383 PTGATTGPNEIVTCTNCGPNPCTHTTTNG 411
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 20.6 bits (41), Expect = 4.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 193 SEAPVTGQYSLLDADGTKRTVDYAG 267
+E P T Y L +GT V++ G
Sbjct: 353 AEWPATTNYLYLTYNGTVHDVEFPG 377
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 20.2 bits (40), Expect = 6.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 118 MTTPASRTTSPNPTP 162
+T P+S SP P+P
Sbjct: 435 LTPPSSNPVSPVPSP 449
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.2 bits (40), Expect = 6.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 127 PASRTTSPNPTPVTSRANPRPVSEAPV 207
PA+ SPN T + R + P + P+
Sbjct: 1503 PAATFLSPNSTTLVLRLHVWPDNGCPI 1529
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.2 bits (40), Expect = 6.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 127 PASRTTSPNPTPVTSRANPRPVSEAPV 207
PA+ SPN T + R + P + P+
Sbjct: 1499 PAATFLSPNSTTLVLRLHVWPDNGCPI 1525
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 67 YHRCEHYDELSCHCVRF 17
+ RC SC CVRF
Sbjct: 477 HSRCPPEIHKSCICVRF 493
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 67 YHRCEHYDELSCHCVRF 17
+ RC SC CVRF
Sbjct: 477 HSRCPPEIHKSCICVRF 493
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 19.8 bits (39), Expect = 8.6
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -3
Query: 85 EHVGHGYHRCEHYDELSC 32
EH G C H+ +L C
Sbjct: 1089 EHGAAGLRLCLHHRDLPC 1106
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 19.8 bits (39), Expect = 8.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -2
Query: 242 VPSASNREYWP 210
VP++ N EY+P
Sbjct: 220 VPASRNEEYYP 230
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,082
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7093251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -