Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A14
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023...    30   1.2  
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179...    27   6.3  
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808...    27   8.3  

>06_03_0668 +
           23301578-23301791,23302102-23302199,23302233-23302301,
           23302674-23302961,23303045-23303208,23303344-23303599,
           23303706-23303816,23304109-23304195,23305916-23305985,
           23306093-23306149,23306309-23306426,23307314-23307403,
           23307492-23307671,23307816-23307893,23308016-23308088
          Length = 650

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 124 INNTNIILKHPNSQSHTNINEIVFYTSRAPALRLSLRN 237
           I   NI+L HP  +   ++++ +  T  +P+ R++LRN
Sbjct: 120 IGEDNILLVHPEGKYVVDVDKSIDITKLSPSTRVALRN 157


>12_02_0556 +
           20415683-20416841,20417563-20417726,20417837-20417926,
           20427889-20429145
          Length = 889

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 124 INNTNIILKHPNSQSHTNINEIVFYTSRAPALRLSLRNTLCNFFIRN 264
           I  T + L H    S++NI++I+  T+  PA+  S  N   N F  N
Sbjct: 786 IQRTTLRLSHQLVSSNSNIDDIIHSTNAPPAIPDSAINHGNNTFSTN 832


>03_02_0394 -
           8081172-8081330,8082015-8082134,8082223-8082271,
           8083193-8083371,8083583-8083852,8084480-8084631,
           8085694-8085715,8086314-8086430
          Length = 355

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 247 NFFIRNPNYFAKFIFSLLT*SKDVSHKFKYLPVKLL 354
           NF+IR P+   K    +   + D S KF YL V+++
Sbjct: 305 NFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEIV 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,715
Number of Sequences: 37544
Number of extensions: 196084
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)