Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A14
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL021469-1|CAA16287.1|  207|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9 signal...    27   9.9  

>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical protein
            ZK430.1 protein.
          Length = 1650

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 189  NFIYVCVTLRIRMFQNNIRIVNLNQVSDDGAIRSAV 82
            +F YV VTL  R+F N + I  L    D+  +++A+
Sbjct: 926  HFRYVVVTLISRIFSNRVLIERLAAYDDEELLKNAL 961


>AL021469-1|CAA16287.1|  207|Caenorhabditis elegans Hypothetical
           protein Y116A8B.1 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 282 IYFFATNMKQRCFS*IQIFASKTALNRILFRI 377
           I FF T+M  RCF   Q   S++ + R+L ++
Sbjct: 163 ITFFGTDMIWRCFKKFQTKKSRSGMKRVLRKL 194


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 40  PISGFEPASI-DAVSDRTTNCAIIAYLV*INNTNIILKHPNSQS-HTNINEIVFYTSRAP 213
           P    EP  + +A +D TTNCA+I   +   +   I++H N QS + + + +V     AP
Sbjct: 619 PEEALEPEKLLEAHTDPTTNCAMIVTGL---HVEPIIEHCNFQSGNADSHTVVVKDHAAP 675

Query: 214 ALR 222
            +R
Sbjct: 676 KMR 678


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 25  HRKHRPISGFEPASIDAVSDRTTNCAIIAY 114
           H  HR  SGF+PA +   S ++T   I+AY
Sbjct: 515 HLPHRS-SGFKPAPVFHPSSQSTTAKILAY 543


>AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9
           signalosome subunit protein 4 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 152 CFRIIFVLLI*TK*AMMAQFVVRSDTASMDAGSNPDI 42
           C RI  +LL  ++     Q+V R+    +D G+NPDI
Sbjct: 160 CIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDI 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,459,388
Number of Sequences: 27780
Number of extensions: 203286
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)