Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A12
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353...    31   0.42 
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626...    27   3.9  
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101...    27   6.9  
06_03_0126 + 16978566-16979104,16979279-16979365,16979481-169795...    27   6.9  
02_02_0181 + 7541831-7541971,7542407-7543279,7544101-7544301,754...    27   6.9  
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9...    26   9.1  
04_03_0636 + 18223229-18223489,18223975-18224519,18225018-182251...    26   9.1  

>03_05_1071 +
           30133696-30133874,30134294-30135200,30135224-30135358,
           30135545-30136553,30136699-30136703
          Length = 744

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 354 WFQQLHRSE-LTSDIARPQPMCSYCKNFVGHLISLYARTSAMRRKVYSDAFLGRNLPVS 181
           W Q  HR       +A P+P   Y +   G L+SL+A+T  +RRKV  +    R+LP S
Sbjct: 50  WRQLRHRGRNRPKGLAFPKPNIPY-RPTAG-LVSLFAKTGTIRRKVRVNDQSVRSLPFS 106


>06_03_1328 +
           29361248-29361502,29361903-29362453,29362585-29362671,
           29362910-29362966,29363069-29363307,29364190-29364308,
           29364397-29364483,29365511-29365567
          Length = 483

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 206 KASEYTLRLIAEVLAYNEIRCPTKFLQ*EHI 298
           +A  Y + LI  + AY  ++C TKFLQ ++I
Sbjct: 149 EAGLYAVWLIPGLFAYGLLQCLTKFLQTQNI 179


>12_01_0133 -
           1011442-1011609,1011792-1011906,1012188-1012279,
           1012384-1012469,1012989-1013088,1014139-1014333
          Length = 251

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 132 MQSKKCCAQKPTFRETQRQADYDPKKHRNTLYVS*LKSLHIMRLDVQQSSYNRSTLAVAE 311
           ++ K+C  QK    E +R  DY   K+++   +  LK   +    ++Q +     L V +
Sbjct: 70  LEKKECFLQKKASAEVERAKDYTKAKNKSAA-IQCLKKKKLYETQIEQLA--NFQLRVHD 126

Query: 312 QCLTLVRSCAAAGT 353
           Q + L  + A   T
Sbjct: 127 QIIMLESAKATTDT 140


>06_03_0126 +
           16978566-16979104,16979279-16979365,16979481-16979537,
           16979648-16979886,16981776-16981894,16982010-16982096,
           16983898-16983971,16984483-16984547,16984581-16984961,
           16985136-16985401
          Length = 637

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 206 KASEYTLRLIAEVLAYNEIRCPTKFLQ*EHIGCGRAMSDVSSLLCS---CW 349
           +A  Y   +I  + AY  ++C  +FLQ +++      S  ++ LC    CW
Sbjct: 62  EAGAYARWMIPALFAYGPLQCHVRFLQTQNVVLPVMASAGAAALCHLVVCW 112


>02_02_0181 +
           7541831-7541971,7542407-7543279,7544101-7544301,
           7544358-7544595,7545732-7545922
          Length = 547

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 143 EMLRAEAHLSRDTETGRLRPKKASEYTLRLIAEVLA 250
           E+ +A   L+   + GRL+P+KA  YT+   A+ LA
Sbjct: 325 EIYKAANSLNSYCKVGRLKPEKAIPYTILKQAKGLA 360


>05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
            9802-9902,10016-10651,10820-10899,11014-11673,
            11787-12041,12154-12281,12515-12669,12735-12919,
            13020-13049,13164-13239,13371-13504,13703-13994,
            14400-14567,14647-14745,14843-15014,15103-15281
          Length = 1352

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 279  NFVGHLISLYARTSAMRRKVYSDAFLGRN 193
            NF  +L + Y  +S    K+Y D FLGRN
Sbjct: 1240 NFSSYLYNEYL-SSISNTKLYDDIFLGRN 1267


>04_03_0636 +
           18223229-18223489,18223975-18224519,18225018-18225104,
           18225187-18225243,18225391-18225629,18225809-18225942,
           18226175-18226261,18226382-18226438
          Length = 488

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 209 ASEYTLRLIAEVLAYNEIRCPTKFLQ*EHIGCGRAMSDVSSLLCS---CW 349
           A  Y   +I  +LAY  ++C  +FLQ ++      +S  ++  C    CW
Sbjct: 152 AGSYIRWMIPALLAYGPLQCHVRFLQTQNAVMPVMLSSGAAAACHLPVCW 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,857
Number of Sequences: 37544
Number of extensions: 204798
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)