Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A12
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    30   0.65 
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U70845-3|AAB09101.1|  244|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    28   2.0  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    27   3.5  
AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical ...    27   4.6  

>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +2

Query: 41  KMSRDKSVWFAEEILLDAKLINFQLESGEWDAVEEMLRAEAHLSRDTETGRLRPKKASEY 220
           KM+ DK   +A+E   D K + +    GEW  V E +  +  +S   +  +     +SEY
Sbjct: 217 KMTSDKCNEYAQEKSTDDKTLKYLTLCGEWCMVSEDMLVKDDVSMKDDCKKSCGGDSSEY 276

Query: 221 TLRLIAEVLAY 253
             ++ +  + Y
Sbjct: 277 CGKVNSRCIVY 287


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 160 SPPFARHRDRQITTQKSIGIHF 225
           S P   HR RQ++T  ++ +HF
Sbjct: 152 SSPIVHHRARQLSTSSTVSVHF 173


>U70845-3|AAB09101.1|  244|Caenorhabditis elegans Hypothetical
           protein F22H10.4 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 318 DIARPQPMCSYCKNF--VGHLISLYARTSAMRRKVYSDAFLGRNLPVSVSRERWASARNI 145
           D+AR +  C+       +  L+    RT++ R+ ++  A +G    +S S   W S  NI
Sbjct: 183 DLARRRNPCTSTIRISAIRDLLDTVLRTASSRKSLFQSAEIGSKKSISGSNCMWFSIPNI 242

Query: 144 S 142
           S
Sbjct: 243 S 243


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 CGRAMSDVSSLLCSCWNQNANIHFKG 379
           C R +SD S+++ + WN + N H  G
Sbjct: 46  CVRIVSDFSTVILASWNSSENCHLFG 71


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 89  DAKLINFQLESGEWDAVEEMLRAEAHLSRDTETGRLRPKKASEYTLRLIAEVLAYNEIRC 268
           D K +N + E   W   +E  + E+ + + +   RLR K+  E    ++ E +  + +R 
Sbjct: 741 DNKKVNEEEEL--WSKKKEKSKKESKIRKPSIRSRLRTKEEPEEEEEVLGEFVRSSSLRI 798

Query: 269 PTK 277
           PT+
Sbjct: 799 PTQ 801


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 89  DAKLINFQLESGEWDAVEEMLRAEAHLSRDTETGRLRPKKASEYTLRLIAEVLAYNEIRC 268
           D K +N + E   W   +E  + E+ + + +   RLR K+  E    ++ E +  + +R 
Sbjct: 741 DNKKVNEEEEL--WSKKKEKSKKESKIRKPSIRSRLRTKEEPEEEEEVLGEFVRSSSLRI 798

Query: 269 PTK 277
           PT+
Sbjct: 799 PTQ 801


>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 82  IVRR*VDKFSIGVRRMGCSRRNVARRSPPFARHRDRQITTQKSIGIHFTSHS 237
           I ++ ++K+ +      C RR +A  S P        +T  + +G+ F S S
Sbjct: 108 ITKQHIEKYDVTCLYYDCKRREIANSSFPTQTAPMSVVTCPRRVGVEFVSVS 159


>AL132876-6|CAC48121.2|  350|Caenorhabditis elegans Hypothetical
           protein Y105E8A.6 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 131 DAVEEMLRAEAHLSRDTETGRLRPKKASEYTLRL 232
           +A  E+LR      RD E G  + K+  EYTLRL
Sbjct: 170 NATTEVLR-RGQRGRDGEDGNKKKKEEIEYTLRL 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,394,369
Number of Sequences: 27780
Number of extensions: 189768
Number of successful extensions: 464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)