Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A11
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   146   1e-36
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   3.3  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   3.3  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   3.3  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   5.8  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    25   7.7  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  146 bits (354), Expect = 1e-36
 Identities = 71/153 (46%), Positives = 99/153 (64%)
 Frame = +2

Query: 8    DKFGNIAVMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRA 187
            DKFGNI ++R P+ VS   DE+ + +K + ++  LN    K D++ +F   +  TSLQ+ 
Sbjct: 1038 DKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKV 1097

Query: 188  TLIPGGSEALLYATVSGSLGVMLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYY 367
             L+ G  E LL+  + G++GV  PF ++ED  FFQ LE  +R E  PL GRDHL++RSYY
Sbjct: 1098 QLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHLAYRSYY 1157

Query: 368  YPVKNVIDGDLCEQFNSLEPAKQKAIAGDLERT 466
             PVK VIDGDLCE + SL    Q+ IA +L+RT
Sbjct: 1158 APVKCVIDGDLCEMYYSLPHPVQEMIANELDRT 1190


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +2

Query: 68  EDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATVSGSLG 247
           ED  GNK LWD   +    Q G+   +    + V SL     IP       +A+V+  LG
Sbjct: 425 EDAVGNKCLWD---ILACKQAGEFDKSEDFEKIVQSLDTVQAIP------RWASVNCLLG 475

Query: 248 VMLPFTSREDH 280
           + L  T  E+H
Sbjct: 476 I-LAVTLDENH 485


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 457 QVTGNSFLFSRFQRIKLFTEITINH 383
           Q+TGN ++F+RF+   L   +  NH
Sbjct: 25  QITGNHWIFARFKFYPLNKIVNYNH 49


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 266 SREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYY 370
           S++     + + +H+RSE++P+    HL ++SY Y
Sbjct: 143 SKKSSTLSRSISLHLRSESAPISLPIHL-YKSYSY 176


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 371 DNNSS*MTNDPARTVASFRFSCASLNVGRSRGLPSR*TE 255
           +N S   +N+P+ T    + S  + ++ ++ GLPSR TE
Sbjct: 419 ENVSRFDSNEPSATSPILKRSSPTDSISQNSGLPSRLTE 457


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 113 LKDLYP----IELYSQSDLHRHHH*QTAVVSSPQCYQTYP 6
           L+D YP    +E+Y +      HH   A+V   QC  T P
Sbjct: 242 LEDNYPGVSDVEIYKKMKEENIHHKSKAIVVLVQCIITSP 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,142
Number of Sequences: 5004
Number of extensions: 37960
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)