Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A11
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 220 5e-58
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 47 7e-06
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 30 1.1
01_06_0928 + 33085403-33089224 30 1.1
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 29 1.4
03_04_0174 - 18044516-18046327 28 3.3
02_04_0061 + 19361562-19363130 28 4.4
07_03_1356 - 25981067-25981105,25981281-25981661 27 7.6
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 27 7.6
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 27 7.6
>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 220 bits (537), Expect = 5e-58
Identities = 97/154 (62%), Positives = 121/154 (78%)
Frame = +2
Query: 8 DKFGNIAVMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRA 187
DKFGNI RLPQ +SD+++EDPTG K W++G LNGA K + +V FHVG+ VT LQ+A
Sbjct: 1060 DKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKA 1119
Query: 188 TLIPGGSEALLYATVSGSLGVMLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYY 367
+LIPGG E L+Y TV GS+G +L FTSRED DFF HLEMH+R E+ PLCGRDH+++RS Y
Sbjct: 1120 SLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAY 1179
Query: 368 YPVKNVIDGDLCEQFNSLEPAKQKAIAGDLERTP 469
+PVK+VIDGDLCEQF SL Q+ IA +L+RTP
Sbjct: 1180 FPVKDVIDGDLCEQFPSLPADMQRKIADELDRTP 1213
>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 47.2 bits (107), Expect = 7e-06
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Frame = +2
Query: 8 DKFGNIAVMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRA 187
D+ G+I+V+ P+ +V E P N A+ G + V F + L
Sbjct: 1129 DRRGSISVLSCPRL---EVSESPEKNLAV-HCSFYMGETAMSIQKVAFKHWLPIDDLTEP 1184
Query: 188 TLIPGGSEALLYATVSGSLGVMLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFRS 361
L ++ +T+ GS+ VM+P TS E+H Q ++ + + +PL G DH FR
Sbjct: 1185 VL-ESVYNCVVASTLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFRR 1242
Query: 362 YYYP--VKNVIDGDLCEQFNSLEPAKQ 436
P V ++DGD+ QF L +Q
Sbjct: 1243 RGIPSGVPPILDGDMLVQFLELTSEQQ 1269
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 169 DVTAAGNTNTRRFGSSVIRNSERFPRGDAS 258
DV+A N +T ++G +R+S+RF GD+S
Sbjct: 704 DVSALHNNSTIKWGEVKVRSSKRFKFGDSS 733
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -1
Query: 209 PNRRVLVLPAAVTSQSHQHGN*LQHPLFAMRHLKDLYPIELYSQSDLHRHH 57
P R ++L +S S G LFA+ HL DL +E+ S LH+ H
Sbjct: 1058 PQMREILLCQCRSSASLHVGGLTSLELFALYHLPDLCVLEVSSSPRLHQVH 1108
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +2
Query: 47 SVSDDVDEDPTGNKALWDRGLLNGASQKGDVV------VNFHVGETVTSLQRATLIPGGS 208
+V+D + G+ L D G+LNGA Q G++ N + V Q A + P S
Sbjct: 165 TVTDMSTQQLLGSSNLLDAGILNGALQNGNIADMACLETNSEKQDEVPCAQSAEIDPSSS 224
Query: 209 EAL 217
E L
Sbjct: 225 EKL 227
>03_04_0174 - 18044516-18046327
Length = 603
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 89 LYSQSDLHRHHH*QTAVVSSP--QCYQTYPS 3
L+ LH HHH Q A SP Q +++YPS
Sbjct: 4 LFRLVSLHHHHHHQHAASPSPPDQPHKSYPS 34
>02_04_0061 + 19361562-19363130
Length = 522
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 41 PQSVSDDVD---EDPTGNKALWDRGLLNGASQKGDVVV 145
P S+S D D DP NK LW G GA GD VV
Sbjct: 103 PASLSFDGDLVLTDPAANKVLWSAGAAAGAG--GDRVV 138
>07_03_1356 - 25981067-25981105,25981281-25981661
Length = 139
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 392 GDLCEQFNSLEPAKQKAIAGDL 457
GDLCE+F++ P + A++G L
Sbjct: 60 GDLCERFSAYAPVEAIAVSGAL 81
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 119 RHLKDLYPIELYSQSDLHRHH 57
R DLYP L S SD H HH
Sbjct: 281 RRSLDLYPPRLSSGSDAHDHH 301
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 8 DKFGNIAVMRLPQSVSDDVDEDPTGNKAL--WDRGLLNGASQKGDV 139
DK+ N + M + ++ + E P G + L W RG++NG + D+
Sbjct: 758 DKYPNDSEMNISGNIFR-IYEAPAGTRCLEKWKRGIVNGRAALDDI 802
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,340
Number of Sequences: 37544
Number of extensions: 275150
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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