Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A11
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   208   1e-54
Z29121-2|CAA82388.2|  294|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    27   6.8  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   9.0  
AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...    27   9.0  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  208 bits (509), Expect = 1e-54
 Identities = 88/153 (57%), Positives = 127/153 (83%)
 Frame = +2

Query: 8    DKFGNIAVMRLPQSVSDDVDEDPTGNKALWDRGLLNGASQKGDVVVNFHVGETVTSLQRA 187
            DKFGN+AV+RLP+ V++DV +DPT +K++WDRG LNGASQK ++V NF +G+T+TSLQ+ 
Sbjct: 1051 DKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLNGASQKVELVSNFFIGDTITSLQKT 1110

Query: 188  TLIPGGSEALLYATVSGSLGVMLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYY 367
            +L+PG +EAL+Y T+ G++G ++ F S+++ DFF +LEMH+RSE  PLCGRDHL++RSYY
Sbjct: 1111 SLMPGANEALVYTTIGGAIGCLVSFMSKDEVDFFTNLEMHVRSEYPPLCGRDHLAYRSYY 1170

Query: 368  YPVKNVIDGDLCEQFNSLEPAKQKAIAGDLERT 466
             P K+VIDGD+CEQF+ ++  KQK +A +L +T
Sbjct: 1171 APCKSVIDGDICEQFSLMDTQKQKDVAEELGKT 1203


>Z29121-2|CAA82388.2|  294|Caenorhabditis elegans Hypothetical
           protein ZK757.2 protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = -1

Query: 353 MTNDPARTVASFRFSCASLNVGRSRGLPSR*TEASPRGNRSLLRITELPNRRVLVLPAAV 174
           M ND +R++ASF  +   +    +  +PS  + +S RG   L R    P +   +LP + 
Sbjct: 212 MVNDTSRSLASFHLTHRPIGASPTLLVPSSSSSSSVRGPIPLQRAHTEPPKEASILPKSA 271

Query: 173 TSQSHQHG 150
                + G
Sbjct: 272 LRDKSKSG 279


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 293 HLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDG 394
           H  +H RSEN P    D    R++ YP+   + G
Sbjct: 162 HTNIHYRSENEPFRKYDVYGLRTWSYPIYKYVYG 195


>AC006615-7|AAK68227.1|  450|Caenorhabditis elegans Hypothetical
           protein C36B7.1 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 251 MLPFTSREDHDFFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDG 394
           ML +     H F   LE +     S LCGR  L+ R Y   +K+++ G
Sbjct: 193 MLDYDHFRGHHFIV-LENYQTDLASYLCGRSKLTPREYIPMIKSIVHG 239


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 143 VNFHVGETVTSLQRATLIPGGSEALLYATVSGSLGVML-PFTSREDHDFFQHL 298
           + F VG+ V  +++A L P GS A    T +  +GV+L    S  DH  F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 143 VNFHVGETVTSLQRATLIPGGSEALLYATVSGSLGVML-PFTSREDHDFFQHL 298
           + F VG+ V  +++A L P GS A    T +  +GV+L    S  DH  F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581


>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 236 GSLGVMLPFTSREDHDFFQHLEMHMRSENSPL 331
           GSL   L F SR   D F  ++ H+R +  PL
Sbjct: 70  GSLLARLQFLSRTYEDEFDSIQFHLRRKFKPL 101


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 236 GSLGVMLPFTSREDHDFFQHLEMHMRSENSPL 331
           GSL   L F SR   D F  ++ H+R +  PL
Sbjct: 70  GSLLARLQFLSRTYEDEFDSIQFHLRRKFKPL 101


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 164 TVTSLQRATLIPGGSEALLYATVSGSLG 247
           TV+S Q +T IP  S + +Y+T+SGS G
Sbjct: 584 TVSS-QPSTYIPVSSASSIYSTLSGSTG 610


>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 287 FQHLEMHMRSENSPLCGRDHLSFRSYY 367
           F HL + MRS    L  RD  +F SYY
Sbjct: 243 FVHLSLIMRSATKKLSKRDKDAFVSYY 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,827,286
Number of Sequences: 27780
Number of extensions: 220197
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)