Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A11
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 347 LSFRSYYYPVKNVIDGDLCE 406
           + FR    PV++ I G +CE
Sbjct: 395 VXFRILTMPVRDAIAGTICE 414


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 TAAGNTNTRRFGSSVIRNSER 237
           T + + + R  GSS+ RNS R
Sbjct: 20  TCSNSQSQRSSGSSISRNSNR 40


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 TAAGNTNTRRFGSSVIRNSER 237
           T + + + R  GSS+ RNS R
Sbjct: 20  TCSNSQSQRSSGSSISRNSNR 40


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 433 FSRFQRIKLFTEITINHVL 377
           ++RFQ ++L  E   NH L
Sbjct: 15  YTRFQTLELEKEFHYNHYL 33


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 281 DFFQHLEMHMRSENSPLC 334
           D  QH E+HM+      C
Sbjct: 384 DRMQHCELHMQPRKKNCC 401


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 281 DFFQHLEMHMRSENSPLC 334
           D  QH E+HM+      C
Sbjct: 384 DRMQHCELHMQPRKKNCC 401


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 414 ILWNRLNKKLLP 449
           ILWN  NK+L P
Sbjct: 808 ILWNMNNKRLDP 819


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 89  LYSQSDLHRHHH*Q 48
           L  Q  L RHHH Q
Sbjct: 132 LIKQETLQRHHHLQ 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,433
Number of Sequences: 438
Number of extensions: 2748
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)