Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A10
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 176 7e-45
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 28 3.5
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 28 3.5
Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical p... 28 3.5
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 28 3.5
Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical p... 28 3.5
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 28 3.5
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 28 3.5
Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 28 3.5
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 3.5
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 3.5
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 27 4.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 4.6
AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical ... 27 4.6
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 27 4.6
AL032635-3|CAB63374.1| 635|Caenorhabditis elegans Hypothetical ... 27 6.1
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 176 bits (428), Expect = 7e-45
Identities = 77/121 (63%), Positives = 101/121 (83%)
Frame = +2
Query: 77 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 256
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 257 MRKAIKDHLETNPALEQLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 436
+RKA++ HL NP+LE+LLPHI NVGFVFT+ DL ++R KLLEN+ APA+ GAIAP
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120
Query: 437 V 439
V
Sbjct: 121 V 121
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 39.5 bits (88), Expect = 0.001
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Frame = +2
Query: 71 SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 250
+K+ ++ K T K+N ++ +D+Y FI N+ S + IR + +S GKN
Sbjct: 13 TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71
Query: 251 TMMRKAIKDHLETNPA--LEQLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 424
++ A+ A L + +KG G +FT +V + E + AR G +
Sbjct: 72 NVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDV 131
Query: 425 APLSVVI 445
A +VV+
Sbjct: 132 ATETVVL 138
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical
protein C01F6.6e protein.
Length = 331
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 254 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 289
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 369 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 404
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 346 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 381
>Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 531 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 566
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 226 QHCAHGQKHHDEESHQGPS--*NKSSSRTTASSHQG 327
+H H Q HH HQ PS N SS ASS G
Sbjct: 390 KHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASSTSG 425
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 381 SLSRTSTRSPRVK--TKPTFPLM*GSSCSRAGFVSRWSLMAFLIMVFLPMS 235
S SRTS +P P+FP+ + CSR G V+ F++ P+S
Sbjct: 20 SSSRTSFCTPSTSHIVSPSFPICIAAKCSRCGCVAAMFYADFVLSKKGPLS 70
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 441 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPT 331
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 27.5 bits (58), Expect = 4.6
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +2
Query: 155 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEQLLPHIKG 328
C G D + GS + + R + GH+ +L + + ++DH+++ ++++ +
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240
Query: 329 NVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV 439
N F+ + L+ L+ + RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 235 AHGQKHHDEESHQGPS*NKSSSRTTASS 318
+HG+KHH + + S + SSS +++SS
Sbjct: 329 SHGKKHHKKAASSSSSSSSSSSSSSSSS 356
>AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical
protein Y67A10A.1 protein.
Length = 644
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 394 FVLQQFITHINKISTGEDKAYISLDVRKQLFESWICFKMVLDGFPH-HGVFAH--EHNAV 224
F++ +++ +I +DK ++ +E ++ +LD FP H F + H AV
Sbjct: 494 FIVARYMNNIKNPVQKDDKIVQQINETIAHYEKYVKKLYILDAFPEFHENFLNLFLHYAV 553
Query: 223 TTQ*NTDLLHL 191
T + D LHL
Sbjct: 554 TRPDDMDALHL 564
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 27.5 bits (58), Expect = 4.6
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +2
Query: 155 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEQLLPHIKG 328
C G D + GS + + R + GH+ +L + + ++DH+++ ++++ +
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240
Query: 329 NVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV 439
N F+ + L+ L+ + RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275
>AL032635-3|CAB63374.1| 635|Caenorhabditis elegans Hypothetical
protein Y51A2A.5 protein.
Length = 635
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -2
Query: 429 GAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFPLM*GSSC 304
G PG +F + R R +T P F L+ +SC
Sbjct: 499 GLQKPGDVACGVIFEKKIKRRVNEEKRPRTDPPFDLVPQTSC 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,747,464
Number of Sequences: 27780
Number of extensions: 249472
Number of successful extensions: 710
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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