Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A09
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 210 6e-56
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 195 3e-51
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 1.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 1.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 2.0
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.6
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 3.5
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 3.5
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 4.6
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.6
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 6.1
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 6.1
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 6.1
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 25 6.1
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 24 8.0
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 24 8.0
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 24 8.0
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 8.0
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 210 bits (513), Expect = 6e-56
Identities = 98/132 (74%), Positives = 114/132 (86%)
Frame = +3
Query: 12 LLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAK 191
+L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R + S + Y+ A EI+ A+
Sbjct: 105 VLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAE 164
Query: 192 MQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQ 371
+ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQ
Sbjct: 165 LAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQ 224
Query: 372 LLRDNLTLWTSD 407
LLRDNLTLWTSD
Sbjct: 225 LLRDNLTLWTSD 236
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 195 bits (475), Expect = 3e-51
Identities = 91/132 (68%), Positives = 109/132 (82%)
Frame = +3
Query: 12 LLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAK 191
+L+KHLIP A+ ESKVFY KMKGDYYRYLAE GE + S +AY+ A +I+ A+
Sbjct: 104 VLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAE 163
Query: 192 MQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQ 371
+ PT P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQ
Sbjct: 164 LPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQ 223
Query: 372 LLRDNLTLWTSD 407
LLRDNLTLWTSD
Sbjct: 224 LLRDNLTLWTSD 235
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 1.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 93 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 239
RY+ ++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 12 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 149
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 2.0
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +3
Query: 150 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 323
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 324 DTLNEDSYKDSTLIMQLLRDN 386
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 203 CGLHFGLADLKSILVCFL*ILYNRMSGFSCGHFC 102
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 3.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 113 GHFCEIPVVISLHFEVKYFTF 51
G+FC++P V+ L K++ F
Sbjct: 341 GNFCDLPKVVELKNRYKFYLF 361
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 3.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 9 VLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDS 149
++ + H SNP S K KG++ Y A G ++ +DS
Sbjct: 220 LVFNLHTSKTYSNPSSFATRKKEKGEHLSYAEAAAVGTQAKNIKKDS 266
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 4.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 3 TRVLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVE 143
T VL K +IP S+ E F+LK Y + ++ G+ +++V++
Sbjct: 532 TTVLTQKQVIPFFSSMELANFHLKQMFGYVKQ-SKTKAGQPQYTVMD 577
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 98 IPVVISLHFEVKYFT-FWIT 42
+P++I LHF K FT W+T
Sbjct: 62 LPILIRLHFYKKLFTILWLT 81
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 18 DKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 137
+KHLI ++NP+ F D Y EV T+ SV
Sbjct: 354 EKHLIALSNNPKGDEFLSPSNLDEMVYSKEVGLSFTQPSV 393
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 209 WVCGLHFGLADLKSILVCFL*ILYNRMSGF-SCGHFCEIPVVISLHFEVKYFTFWITSFR 33
++ GL + ++ + C ILY F S + I+ F + YF +W+ SF
Sbjct: 152 FIAGLFYYGTNVYTGAECVQTILYAIFKSFRSYKNRLPADAGITSDFLISYFVYWVISFP 211
Query: 32 YKVL 21
+ ++
Sbjct: 212 FHLI 215
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 6 RVLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG 119
RVL ++ ++ K NP + K K D Y+ + TG
Sbjct: 614 RVLQNREVMYKYLNPNLFALFSKCKNDLVVYVMDSVTG 651
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 15 LDKHLIPKA--SNPESKVFYLKMKGDYYRYLA 104
+++H + K+ S P S+ YLK+ YR+LA
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLA 36
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 15 LDKHLIPKA--SNPESKVFYLKMKGDYYRYLA 104
+++H + K+ S P S+ YLK+ YR+LA
Sbjct: 5 IERHHVRKSQRSKPASENVYLKLLVKLYRFLA 36
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +3
Query: 48 PESKVFYLKMKGD--YYRYL 101
PE K+FY K GD Y +YL
Sbjct: 525 PEGKLFYEKQTGDNPYLKYL 544
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 8.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 219 GLALNFSVFYYEI--LNSPDKACQLAKQAFDDAIAELDTLNEDSY 347
G A N F+ + + S KACQ + Q A+ EL+ +D Y
Sbjct: 18 GFANNKDAFFQTLGGVQSIQKACQTSFQNPKQALLELNLRPKDKY 62
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 8.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 98 SRRSGHRRNQTFCCRGFTE 154
++R HR QTF C F E
Sbjct: 677 NKRDSHREPQTFNCDSFNE 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,776
Number of Sequences: 5004
Number of extensions: 31982
Number of successful extensions: 104
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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