Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A09
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.19 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.33 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.33 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 270 LVNLISHNRRRRNLTPNPALLGVWA 196
           L N  + NR RR L+    +LG+WA
Sbjct: 16  LENEFNINRPRRKLSKKQQMLGIWA 40


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -3

Query: 205 CVGCILALLISKASWYAFCESSTTECLVSPVATSARY 95
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -3

Query: 205 CVGCILALLISKASWYAFCESSTTECLVSPVATSARY 95
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 153 SVNPLQQNVWFLLWPLLRDTCS 88
           +V+PLQ    FL  P L D CS
Sbjct: 10  NVSPLQCTSPFLGGPQLTDVCS 31


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 202 VGCILALLISKASWYAFCESSTTECLVSPV 113
           V C++AL I  A+W    E+   + +V  V
Sbjct: 6   VFCLMALSIVDAAWKPLPENLKEDLIVYQV 35


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 125 QTFCCRGF 148
           +TFCC+G+
Sbjct: 455 KTFCCKGY 462


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 202 VGCILALLISKASWYAFCESSTTECLVSPV 113
           V C++AL I  A+W    E+   + +V  V
Sbjct: 6   VFCLMALSIVDAAWKPLPENLKEDLIVYQV 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,342
Number of Sequences: 438
Number of extensions: 2065
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)