Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A08
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   259   2e-70
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   258   4e-70
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   257   5e-70
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   4.4  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   4.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   5.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   5.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   5.8  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   7.6  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  259 bits (634), Expect = 2e-70
 Identities = 114/151 (75%), Positives = 129/151 (85%)
 Frame = +3

Query: 15  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 194
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 195 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 374
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 375 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPD 467
           YKLCKV+RV  G K VP+LVTHDGRT+RYPD
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  258 bits (631), Expect = 4e-70
 Identities = 113/151 (74%), Positives = 129/151 (85%)
 Frame = +3

Query: 15  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 194
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 195 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 374
           V  I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 375 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPD 467
           YKLCKV+RV  G K VP+LVTHDGRT+RYPD
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  257 bits (630), Expect = 5e-70
 Identities = 113/151 (74%), Positives = 129/151 (85%)
 Frame = +3

Query: 15  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 194
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 195 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 374
           V  I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61  VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120

Query: 375 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPD 467
           YKLCKV+RV  G K VP+LVTHDGRT+RYPD
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 427 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 248
           YGTLL        L  L   +   + +  +LP   ++    +F  ++  T+    G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635

Query: 247 VR--TFPSTLMRRCFTILSTS 191
            +  T  S ++  CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 409 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 290
           P+  RRT   L L+   +  W     F S + RN   +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 276  DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 452
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   K+VP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 453  LR 458
            L+
Sbjct: 1778 LK 1779


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 144 LVIFLRNRLKYALTGNEVLKIV 209
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 84  GGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 263
           G + A RP +G  K+      V  LRN    A    +   IV  R   ++ + RT P+  
Sbjct: 201 GNLNARRPQSGLLKIT-----VGSLRNVTHSAGISKQTEMIVAIRAEDLE-RARTRPSRT 254

Query: 264 AGFMDV--VSIEKTNELFRLIYDVK 332
             F +   + +EKTNE+  ++Y+ K
Sbjct: 255 DRFNETFEIDLEKTNEVEIVVYEKK 279


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 319 IKRNNSFVFSMDTTSINPAGYVGSV 245
           +K+ ++ VF     +INPA Y G+V
Sbjct: 40  LKKRDTNVFDSVVDTINPASYFGTV 64


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 172 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 74
           L R +R   +   + S+W  +E   A+  PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,513
Number of Sequences: 5004
Number of extensions: 41146
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)