Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A07
         (223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   3.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   3.1  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    23   7.2  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    23   7.2  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    22   9.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    22   9.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    22   9.5  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    22   9.5  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 137 SDLYVESWLVLLRIAIGCLFF 199
           SDL  + WL  L  A  C+FF
Sbjct: 22  SDLRTQFWLAFLLGASACVFF 42


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 6   QEFGTRLLQGERYAYIFLVRVILHSRFKLMLSSSVRLGSQ*RLEAISTSSPGWSFFE*QS 185
           Q  G   ++G RYA IFL   +     K++ +  +   S+  L  +S    G   F   S
Sbjct: 79  QLVGIEHVEGSRYALIFLSEKLDFKSLKVIANHQLTKSSK-SLSNVSNKPLGDQLFRSNS 137

Query: 186 VVCSSFYLK 212
           ++  S   K
Sbjct: 138 LMSPSLLKK 146


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 132 LEAISTSSPGWSFFE*QSVVCSSFYLKT 215
           L+ + T+SP +  F  +S +CS+  L +
Sbjct: 82  LQEVGTNSPSYYLFGHESNICSASALNS 109


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 95  ALLFSSFRITVKTRSDLYVESWLVLLRIAIG 187
           A +  S   +VK  S LYV ++LVLL   +G
Sbjct: 176 ASILLSVACSVKMSSLLYVPAYLVLLLQILG 206


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 37  NDMLTSSLYASFFIVVSSLCSPLQFV*DHS 126
           N +  SS Y +FF   S LC+   F  D S
Sbjct: 582 NGLRMSSFYGNFFNRSSDLCAFPSFPRDQS 611


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 175 SKKDQPGLDVEIASSLHCDPKRTEE 101
           +KKDQ G D  +    HC+    E+
Sbjct: 807 NKKDQSGTDKLMKKIYHCEQSLKEK 831


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 107 SSFRITVKTRSDLYVESWLVLLRIAIGCLFFVLL 208
           S + +  K     Y   WL L  + IGC+  V L
Sbjct: 211 SRYHVYHKAPFTFYWFKWLFLTGVCIGCVCSVKL 244


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   QEFGTRLLQGERYAYIFLVRVILHSR 83
           Q+FG +L + +   Y FLV+V   SR
Sbjct: 118 QKFGEKLWETDESRYDFLVKVEPASR 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,895
Number of Sequences: 5004
Number of extensions: 13282
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)