Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A07
         (223 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1168 + 26651863-26651974,26652087-26652290,26652392-266525...    28   1.2  
03_05_0255 + 22435027-22435072,22436022-22437085                       26   3.6  
02_04_0148 - 20198407-20201424                                         26   3.6  
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215...    26   4.7  
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    26   4.7  
09_02_0545 - 10442199-10442224,10442327-10443143                       25   8.3  

>12_02_1168 +
           26651863-26651974,26652087-26652290,26652392-26652542,
           26653355-26653399,26653528-26653598,26653678-26653763,
           26653976-26654078,26654300-26654406
          Length = 292

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  VSSLCSPLQFV*DHSEDSKRSLRRVL 159
           +SSLC+ L  V +H++DS R+L   L
Sbjct: 5   ISSLCTALSSVLNHADDSSRALSDAL 30


>03_05_0255 + 22435027-22435072,22436022-22437085
          Length = 369

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 184 DCYSKKDQPGLDVEIASSLHCDPKRTEEESIS 89
           D Y   D    D ++  SL C P++TE E  S
Sbjct: 208 DAYKGSDSLDEDPQMDGSLECGPQKTEMEPSS 239


>02_04_0148 - 20198407-20201424
          Length = 1005

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 127 EDSKRSLRRVLVGPSSNSNRLSVLRFT 207
           EDSK  L +V+ G S NSN +   RF+
Sbjct: 641 EDSKELLAQVIEGDSGNSNGVLDSRFS 667


>04_04_1658 -
           35119623-35119754,35121033-35121121,35121205-35121599,
           35122009-35122091,35122163-35124184,35124859-35124927,
           35125050-35125130,35125215-35125308,35125435-35125499,
           35125961-35126038,35126115-35126360
          Length = 1117

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 181 CYSKKDQPGLDVEIASSL 128
           CY+ K   GLDV +A+SL
Sbjct: 554 CYTAKTPAGLDVSVANSL 571


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 92  YALLFSSFR-ITVKTRSDLYVE-SWLVLLRIAIGCLFFVLLEDG 217
           YA+    F  ++ K  SD+ ++  W+  + I +GC F V+   G
Sbjct: 176 YAIALVVFALVSAKACSDIVLQYRWIAYVSIFVGCCFLVVFYAG 219


>09_02_0545 - 10442199-10442224,10442327-10443143
          Length = 280

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 132 LEAISTSSPGWSFFE*QSVVCS 197
           L  ++TS  GWS+     ++CS
Sbjct: 112 LHVLATSGDGWSYLRSVEIICS 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,459,301
Number of Sequences: 37544
Number of extensions: 80809
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)