Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A07
         (223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   5.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   5.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    19   7.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   7.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   9.5  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 118 DHSEDSKRSLRRVL 159
           DH+ +SK+++ R+L
Sbjct: 20  DHTINSKKTIMRIL 33


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 118 DHSEDSKRSLRRVL 159
           DH+ +SK+++ R+L
Sbjct: 3   DHTINSKKTIMRIL 16


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 172 KKDQPGLDV 146
           KK  PGLDV
Sbjct: 64  KKQNPGLDV 72


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 169 KDQPGLDVEIASSLHCD 119
           K++   +VE  SSLH D
Sbjct: 188 KERDQSEVESTSSLHSD 204


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 169 KDQPGLDVEIASSLHCD 119
           K++   +VE  SSLH D
Sbjct: 188 KERDQSEVESTSSLHSD 204


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = -2

Query: 198 KNRQPIAIRRRTNQD 154
           +  QP+ + R+ N D
Sbjct: 256 QQHQPVTVNRQLNSD 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,091
Number of Sequences: 438
Number of extensions: 844
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)