Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A05
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    93   1e-20
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    92   2e-20
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    27   0.62 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   1.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   2.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    24   5.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    24   5.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 92.7 bits (220), Expect = 1e-20
 Identities = 42/80 (52%), Positives = 56/80 (70%)
 Frame = -3

Query: 344 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRD 165
           ARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R 
Sbjct: 127 ARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRS 186

Query: 164 AGRFANDGCNVKYRPEHGPL 105
            G    DGC  K+  + G L
Sbjct: 187 RGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 92.3 bits (219), Expect = 2e-20
 Identities = 42/80 (52%), Positives = 56/80 (70%)
 Frame = -3

Query: 344 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRD 165
           ARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R 
Sbjct: 127 ARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRS 186

Query: 164 AGRFANDGCNVKYRPEHGPL 105
            G    DGC  K+  + G L
Sbjct: 187 RGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 344 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 216
           AR+ IG+ +  +      K     AL++A F  PG+ +I V +
Sbjct: 139 ARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 56  KYFTHYVVHFGISSRHRGVHALGGT*RCIHR*QN 157
           KY  H+ VH      H  + ++ G  RCI +  N
Sbjct: 589 KYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPN 622


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 190 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 104
           V +LRS+++ + L+++ ++SST   + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 135 RQVPPRAWTPRCLE 94
           R VP +AW  RC+E
Sbjct: 171 RNVPEKAWANRCVE 184


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 194 EREEFEKLRDAGRFANDGCNVKY 126
           +R+  ++L D  +F  D CNV+Y
Sbjct: 148 QRDHLDRLCDQVKFYLDQCNVEY 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,571
Number of Sequences: 5004
Number of extensions: 25899
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)