Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A05
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...    96   7e-21
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    29   1.2  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   1.6  
Z81094-3|CAB03151.1|  477|Caenorhabditis elegans Hypothetical pr...    27   2.7  
L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   2.7  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        27   4.8  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    27   4.8  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    27   4.8  
Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    26   8.3  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    26   8.3  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 44/83 (53%), Positives = 57/83 (68%)
 Frame = -3

Query: 344 ARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRD 165
           ARV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++RE++E++R 
Sbjct: 127 ARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRA 186

Query: 164 AGRFANDGCNVKYRPEHGPLDVW 96
            GR  +DG  V+ + EHGPL  W
Sbjct: 187 EGRLRSDGVGVQLQREHGPLTKW 209


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
          protein Y38H6C.13 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 40 VYYYFKIFYTLCSSFWNFLQ 99
          V+Y FKIF + CS+F+ F++
Sbjct: 20 VFYPFKIFLSACSNFFQFIR 39


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 136 TSSTAQSMDPSMSGGNSKMNYIVCKIF*NNNTLP 35
           T S+  SM+P+ S  NS  N+ V     N+N LP
Sbjct: 881 TPSSIPSMEPTRSTANSSKNHPVSSKISNSNRLP 914


>Z81094-3|CAB03151.1|  477|Caenorhabditis elegans Hypothetical
           protein F58G11.4 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 31  ALGVYYYFKIFYTLCSSFWNFLQTSRGPCS-GRYLTLH 141
           +L VY+ + IF T+  ++   L  S GP S G  +TLH
Sbjct: 19  SLVVYFQYAIFTTIMYTYMTKLDPSVGPTSFGLAVTLH 56


>L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical
           protein ZK353.8 protein.
          Length = 469

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 323 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDA 162
           PI S  +S     ++ E + RAK     +++    KK    K+ +EE  K R+A
Sbjct: 155 PIQSSSTSQEMTRELAEKVARAKALLEQKKQKDAEKKREADKHVKEEMTKAREA 208


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 272 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFE 177
           + + AKF+FP  +   +S+ +    Y++EEFE
Sbjct: 394 SFQEAKFQFPRIELHQISELFNLGTYQKEEFE 425


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 181 LRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS-KMNYIVCKIF*NNNTL 38
           LRS+  +   LT ++ S T  S  PS+ GG S K +      +  NN+L
Sbjct: 278 LRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYWGTNNSL 326


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 181 LRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS-KMNYIVCKIF*NNNTL 38
           LRS+  +   LT ++ S T  S  PS+ GG S K +      +  NN+L
Sbjct: 278 LRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYWGTNNSL 326


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 181 LRSYVMLDVLLTMDATSSTAQSMDPSMSGGNS-KMNYIVCKIF*NNNTL 38
           LRS+  +   LT ++ S T  S  PS+ GG S K +      +  NN+L
Sbjct: 306 LRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYWGTNNSL 354


>Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical
           protein T06E8.1 protein.
          Length = 282

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 213 LLRYIDLLATRELELSTTQSLNDLCLPTVT*AYR 314
           ++R +D + T+ L L     L+D+C   +  AY+
Sbjct: 225 VIRVLDAIPTKGLTLDDVSELSDMCRDVMLAAYK 258


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 49   YFKIFYTLCSSFWNFLQTS-RGPCSGRYLTL 138
            YF     +CS  +N L  S +GPC G  +TL
Sbjct: 4072 YFLRAIQVCSQVFNTLTESIQGPCVGNQMTL 4102


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 49   YFKIFYTLCSSFWNFLQTS-RGPCSGRYLTL 138
            YF     +CS  +N L  S +GPC G  +TL
Sbjct: 4064 YFLRAIQVCSQVFNTLTESIQGPCVGNQMTL 4094


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,829,226
Number of Sequences: 27780
Number of extensions: 146355
Number of successful extensions: 400
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)