Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A04
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   2.5  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   2.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   2.5  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   4.3  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   7.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   7.6  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   10.0 
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    24   10.0 

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 277 YSVNVQIKCIIIYFTISCFF 218
           +SV + I C I++  I CFF
Sbjct: 120 FSVTIGITCPIVFIAIFCFF 139


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = +2

Query: 50  NYITENH*LLIHHFMLMSGSIQKAFKRVCIEAKAKFLGNKVLVSKNKVKTVWHIINKETG 229
           N++ E +   IH   +    ++KAF+ + ++   K +    ++S ++ +++W       G
Sbjct: 81  NFVQEANLQNIHLVTVYLELLEKAFECIDLDDNCKLIWESTVLSDHQKQSLWTEFIFFLG 140

Query: 230 NSKI 241
           N KI
Sbjct: 141 NFKI 144


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 222 SLFMMCQTVLTLFLDTRTLFPKNF--ALASIH 133
           +LF + QTVLTL ++T   F  N    LA +H
Sbjct: 335 TLFSLLQTVLTLDVETVRAFSNNILEGLAELH 366


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 86  HFMLMSGSIQKAFKRVCIEAKAKFLGNKVL 175
           H  L S S   A ++ CIE   K+L N+ L
Sbjct: 314 HLALDSSSAALAVEKNCIEGSLKYLENQFL 343


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 267 TFRLSVLLFILLFPVSLFMMCQTVLTL 187
           TF   V+LF  L P+SL++  + V T+
Sbjct: 503 TFFTGVILFQNLVPISLYISIEIVKTI 529


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 193  DLIFRHENFISQKFCFSFYTY 131
            DL    +NF  Q  CFSF TY
Sbjct: 3512 DLWLFRKNFSYQYACFSFITY 3532


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 EAKAKFLGNKVLVSKNKVKTVWHIINKETGNSKI 241
           E K+  L  K++ S+  +K + HI+   T  SKI
Sbjct: 230 EHKSVNLLYKLVTSRQAIKYLEHILRTNTNGSKI 263


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 49  ELYHRKSLTTNSSFHAYVRQYSKSV 123
           E Y +++   + SFHAY+R+ + +V
Sbjct: 161 ESYRQENKIKHLSFHAYLRKINSNV 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,014
Number of Sequences: 5004
Number of extensions: 25097
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)