Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A04
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.       30   2.5  
AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant p...    30   2.5  
AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1 ...    30   2.5  
AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like pr...    30   2.5  
AB065956-1|BAC06169.1|  312|Homo sapiens seven transmembrane hel...    29   4.3  
M89955-1|AAA35491.1|  377|Homo sapiens 5-HT1D-type serotonin rec...    29   7.5  
M81589-1|AAA60315.1|  377|Homo sapiens serotonin 1D receptor pro...    29   7.5  
BT007027-1|AAP35673.1|  377|Homo sapiens 5-hydroxytryptamine (se...    29   7.5  
BC007720-1|AAH07720.1|  377|Homo sapiens 5-hydroxytryptamine (se...    29   7.5  
AL049576-1|CAB81617.1|  377|Homo sapiens 5-hydroxytryptamine (se...    29   7.5  
AF498979-1|AAM21126.1|  377|Homo sapiens 5-hydroxytryptamine rec...    29   7.5  

>BC117178-1|AAI17179.1| 1332|Homo sapiens NPC1L1 protein protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 252 VLLFILLFPVSLFMMCQTVLTLFLDTRTLFPKNFALASIHTRLNAF 115
           +LLF+ LF VSL+ MC   +++ LD     PK+  L      LN +
Sbjct: 850 LLLFLALFGVSLYSMCH--ISVGLDQELALPKDSYLLDYFLFLNRY 893


>AY515256-1|AAS56939.1| 1332|Homo sapiens NPC1L1 splice variant
           protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 252 VLLFILLFPVSLFMMCQTVLTLFLDTRTLFPKNFALASIHTRLNAF 115
           +LLF+ LF VSL+ MC   +++ LD     PK+  L      LN +
Sbjct: 850 LLLFLALFGVSLYSMCH--ISVGLDQELALPKDSYLLDYFLFLNRY 893


>AY437865-1|AAR97886.1| 1332|Homo sapiens Niemann-Pick C1-like 1
           protein.
          Length = 1332

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 252 VLLFILLFPVSLFMMCQTVLTLFLDTRTLFPKNFALASIHTRLNAF 115
           +LLF+ LF VSL+ MC   +++ LD     PK+  L      LN +
Sbjct: 850 LLLFLALFGVSLYSMCH--ISVGLDQELALPKDSYLLDYFLFLNRY 893


>AF192522-1|AAF20396.1| 1359|Homo sapiens Niemann-Pick C1-like
           protein 1 protein.
          Length = 1359

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 252 VLLFILLFPVSLFMMCQTVLTLFLDTRTLFPKNFALASIHTRLNAF 115
           +LLF+ LF VSL+ MC   +++ LD     PK+  L      LN +
Sbjct: 850 LLLFLALFGVSLYSMCH--ISVGLDQELALPKDSYLLDYFLFLNRY 893


>AB065956-1|BAC06169.1|  312|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 291 LFEICTPSTFRLSV-LLFILLFPVSLFMMCQTVLTLFLDTRTLFPKNFALASI 136
           L  +  PS   L + +LF+L+F ++L      +L +FLDT    P  F L+ +
Sbjct: 13  LLGLFPPSKIGLFLFILFVLIFLMALIGNLSMILLIFLDTHLHTPMYFLLSQL 65


>M89955-1|AAA35491.1|  377|Homo sapiens 5-HT1D-type serotonin
           receptor protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 318 SCNTVATSELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTLF-PKNFALA 142
           S N   TSE ++  T    ++S+ + + +  ++  +    VLT  L TR L  P N+ + 
Sbjct: 19  SLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

Query: 141 SIHT 130
           S+ T
Sbjct: 79  SLAT 82


>M81589-1|AAA60315.1|  377|Homo sapiens serotonin 1D receptor
           protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 318 SCNTVATSELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTLF-PKNFALA 142
           S N   TSE ++  T    ++S+ + + +  ++  +    VLT  L TR L  P N+ + 
Sbjct: 19  SLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

Query: 141 SIHT 130
           S+ T
Sbjct: 79  SLAT 82


>BT007027-1|AAP35673.1|  377|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 1D protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 318 SCNTVATSELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTLF-PKNFALA 142
           S N   TSE ++  T    ++S+ + + +  ++  +    VLT  L TR L  P N+ + 
Sbjct: 19  SLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

Query: 141 SIHT 130
           S+ T
Sbjct: 79  SLAT 82


>BC007720-1|AAH07720.1|  377|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 1D protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 318 SCNTVATSELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTLF-PKNFALA 142
           S N   TSE ++  T    ++S+ + + +  ++  +    VLT  L TR L  P N+ + 
Sbjct: 19  SLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

Query: 141 SIHT 130
           S+ T
Sbjct: 79  SLAT 82


>AL049576-1|CAB81617.1|  377|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 1D protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 318 SCNTVATSELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTLF-PKNFALA 142
           S N   TSE ++  T    ++S+ + + +  ++  +    VLT  L TR L  P N+ + 
Sbjct: 19  SLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

Query: 141 SIHT 130
           S+ T
Sbjct: 79  SLAT 82


>AF498979-1|AAM21126.1|  377|Homo sapiens 5-hydroxytryptamine
           receptor 1D protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 318 SCNTVATSELFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTLF-PKNFALA 142
           S N   TSE ++  T    ++S+ + + +  ++  +    VLT  L TR L  P N+ + 
Sbjct: 19  SLNATETSEAWDPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

Query: 141 SIHT 130
           S+ T
Sbjct: 79  SLAT 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,901,922
Number of Sequences: 237096
Number of extensions: 758560
Number of successful extensions: 1198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)