Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A04
         (400 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-336|AAF51309.2|  402|Drosophila melanogaster CG15377-PA...    29   2.3  
AY061150-1|AAL28698.1|  320|Drosophila melanogaster LD12309p pro...    27   9.2  
AE014298-2586|AAF48742.2|  320|Drosophila melanogaster CG8408-PA...    27   9.2  

>AE014134-336|AAF51309.2|  402|Drosophila melanogaster CG15377-PA
           protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = -2

Query: 291 LFEICTPSTFRLSVLLFILLFPVSLFMMCQTVLTLFLDTRTL 166
           + + CT  T + +V++ ++ F  + F++C T+L + L+T +L
Sbjct: 266 IIDFCTDLTRQFTVIV-LMHFLSAAFVLCSTILDIMLNTSSL 306


>AY061150-1|AAL28698.1|  320|Drosophila melanogaster LD12309p
           protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 273 PSTFRLSVLL-FILLFPVSLFMMC 205
           P +  LS+LL F+  FP++LF++C
Sbjct: 158 PGSLFLSILLGFLYKFPIALFLIC 181


>AE014298-2586|AAF48742.2|  320|Drosophila melanogaster CG8408-PA
           protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 273 PSTFRLSVLL-FILLFPVSLFMMC 205
           P +  LS+LL F+  FP++LF++C
Sbjct: 158 PGSLFLSILLGFLYKFPIALFLIC 181


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,876
Number of Sequences: 53049
Number of extensions: 237071
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)