Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A03
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.2  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   2.2  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   5.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   6.8  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   6.8  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 372 YWASSCVGHIIIPFIHCWKNCTFYRVRDRTSD 467
           YW +  +  II+PF+  +    F   R R SD
Sbjct: 124 YWLTFVLSWIILPFVQGYMESKFSTPRSRLSD 155


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 341 LFGFWVHCT*LLGQQLRGPHYYSVYTLLEELYILSCTRSYL 463
           L G W     LL Q+  G HY+S+    E +Y L    ++L
Sbjct: 218 LCGCWSEEMQLLIQRTYGDHYFSLVLASETIYSLPSLENFL 258


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 278 LTINALRGAGVHISTI*KTYPLFGFWVHCT*LLGQQLRGPHYY--SVYT 418
           +T+N L G+  HI    ++   FG++ +   +L + + G  YY  +VYT
Sbjct: 117 MTLNGLFGSHYHIPFAVQSRASFGYYFNTLIILLRFIAGLFYYGTNVYT 165


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 280 DDQRVERCRRAHLNDLENIPAFWILGALYVTT---GPAVAWATLLFRLY 417
           D + VE+C     +D +N   +WI  + Y++T    P +A  TL   LY
Sbjct: 443 DFESVEKCWSDMFHDFQNQALYWI--SRYISTMKYNPELAAETLKKSLY 489


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 399 IIIPFIHCWKNCTFYRVRDRTSDVTG 476
           I+IPFI+     T Y VR R  D  G
Sbjct: 139 ILIPFIYYDGTSTTYHVRTRLKDSVG 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,779
Number of Sequences: 5004
Number of extensions: 39027
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)